BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353659
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37170.1 | Symbols: | O-methyltransferase family protein | ... 867 0.0
AT1G77520.1 | Symbols: | O-methyltransferase family protein | ... 676 0.0
> AT5G37170.1 | Symbols: | O-methyltransferase family protein
| chr5:14712811-14714303 FORWARD LENGTH=1005
Length=1005
Score = 867 bits (469), Expect = 0.0
Identities = 616/686 (90%), Gaps = 13/686 (2%)
Strand=Plus/Plus
Query 341 GGACACATCTGAAGGATGTGATATTACAAGAAGAAAAAGATGCATTCAGCTCTGCCCATG 400
|||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||
Sbjct 327 GGACACATCTGAAGGATGTG--A-TACACGAAGAAAAAGATGCATTCAGTTCTGCCCATG 383
Query 401 ACATGAGACTCTTCGAATACATTGGGT-TGGACGAACAATTCGCTGGTATGTTAAACCAG 459
|||| |||||| ||||||| || || ||||||||||||||||| ||| || ||||||
Sbjct 384 GCATGGGACTCTACGAATACGTT--GTACGGACGAACAATTCGCTGCTATATTTAACCAG 441
Query 460 GCAATGTCAGAATCTTCTACCATGATCATGAAGAAGATTTTCGAAGTTTACAAAGGATTC 519
||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 442 GCAATGTCAGATTCCTCTACCATGATCATGACGAAGATTTTAGAAGTTTACAAAGGATTA 501
Query 520 AAAGATGTAAATACTTTAGTTGATATTGGGGGAGGACTTGGCACCATTCTAAATCTTGTC 579
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 502 AAAGATGTAAATACTTTAGTTGATATTGGAGGAGGACTTGGCACCATTCTAAATCTTGTC 561
Query 580 A---CTTCCAAGTATCCTCAAATTAAGGGTATCAATTTCGATCTAGCCACGGTATTAGCT 636
| | |||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 562 ATTTCGTCCAAGTATCCTCAAATTAAGGGTATCAATTTCGATCTAGCCGCAGTTTTAGCC 621
Query 637 AATGCTCCATT-TTATTCAGGAGTGGAGCATGTATCGGGAGATATGTTTATAGAAGTTCC 695
| |||||| || |||| | ||||| ||||||||| | ||||||||||||||||| |||||
Sbjct 622 ACTGCTCC-TTCTTATCCCGGAGTTGAGCATGTACCCGGAGATATGTTTATAGACGTTCC 680
Query 696 AAAAGGAGATGCAATCTTCATGAAATGGATATTACATGACTGGAACGACGAAGATTGTGT 755
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 681 AAAAGGAGATGCAATCTTCATGAGGCGGATATTACGTGACTGGAACGACAAAGATTGTGT 740
Query 756 AAAGAT-TCTAAAAAACTGTTGGAAGAGTCTTCCGGAAAAGGGAAAAGTGATAATAGTTG 814
|||||| | ||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 741 AAAGATAT-TAACAAATTGTTGGAAGAGTCTTCCGGAAAAGGGAAAAGTTATAATAGTTG 799
Query 815 ATATGGTTACACCATCAGAACCAAAGAGTGACGACCTTTTCTCTAACATCGTCTTTGGTA 874
| |||||| |||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 800 ACATGGTTGCACCATCAGAACCAAAGAGTGACGACATTTTCTCTAAGGTTGTCTTTGGTA 859
Query 875 TGGACATGTTGGTGTTGACACAATGTTCGGGTGGTAAAGTGAAGTCTTTTTCTCAGTTTG 934
|||||||||| |||| |||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 860 CGGACATGTTGATGTTAACACAATGTTCGTGTGGTAAAGTGAGGTCTTTTGCTCAGTTTG 919
Query 935 AAGCTTTAGCCTCTGCTTCGGGGTTTCTTAAATGTGAAATCAGTGCTCTTGCTTATACAT 994
||||||||||||||||||| || |||| |||||||||| | |||| ||||||||||||||
Sbjct 920 AAGCTTTAGCCTCTGCTTCAGGTTTTCATAAATGTGAAGTAAGTGGTCTTGCTTATACAT 979
Query 995 ATTATGTTATCGAAATCCACAAGTAG 1020
||| |||||||||| ||||||| |||
Sbjct 980 ATTCTGTTATCGAATTCCACAAATAG 1005
Score = 274 bits (148), Expect = 1e-72
Identities = 177/191 (93%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 61 GGCGTATGGCTCTCGTCTTCGGAGATAGCTTTTGGTCTCCCTACCAAACCCACCAACCCA 120
||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||
Sbjct 139 GGCGTATGGCTCTCGCCTTCCGAGATAGCTTTTGGTCTCCCTACCAAGCCTACCAACCCA 198
Query 121 GAGGCGCCAATTTTGCTAGACCGTATGTTACGGTTACTCGTCAGCCACTCGATCTTGAAA 180
||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GAGGCACCGATGTTGATAGACCGTATGTTACGGTTACTCGTCAGCCACTCGATCTTGAAA 258
Query 181 TGTCGTATAGTTGAAACCGGAGAAAACGATCTAACCGGAAAG-ACCCAAAGGGTATATGC 239
|||||| |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||
Sbjct 259 TGTCGTTTAGTTGAAACCGGAGAAAACAATCGAACCG-AAAGTACCCAAAGGGTATATGC 317
Query 240 AGCCGAACCGG 250
||| |||||||
Sbjct 318 AGCGGAACCGG 328
> AT1G77520.1 | Symbols: | O-methyltransferase family protein
| chr1:29130403-29132180 FORWARD LENGTH=1473
Length=1473
Score = 676 bits (366), Expect = 0.0
Identities = 829/1045 (79%), Gaps = 61/1045 (6%)
Strand=Plus/Plus
Query 1 ATGGTTTTCAAAGCTGCCTTGGAGCTTGGCGTCCTCGACACGAT---TGTTGCCGTTGAC 57
|||||| ||||||| ||||| |||||||||||| ||||||| || || ||| | ||
Sbjct 284 ATGGTTCTCAAAGCCGCCTTCGAGCTTGGCGTCATCGACACCATCGCTGCTGCAGGAAAC 343
Query 58 GACGGCGTATGGCTCTCGTCTTCG-GAGATAGCTTTTGGTCTCCCTACCAAACCCACCAA 116
||| || |||||||| | | | |||||||| | | ||||||| ||||||||||||||
Sbjct 344 GAC-ACG--TGGCTCTCACCGT-GTGAGATAGCGTGTAGTCTCCCAACCAAACCCACCAA 399
Query 117 CCCAGAGGCGCCAATTTTGCTAGACCGTATG-TTACGGTTACTCGTCAGCCACTCGATCT 175
||| |||||||| | ||||| ||||| ||| | | | ||||| ||||||||||||||||
Sbjct 400 CCCGGAGGCGCCGGTGTTGCTTGACCGGATGCTGA-GCTTACTTGTCAGCCACTCGATCT 458
Query 176 TGAAATGTCGTATAG-TTGAAACCGGAGAAAACGATCTAACCGGAAAGACCCAAAGGGTA 234
|||| || ||||| | ||||||||||||| |||| || ||||||||||| | | ||||||
Sbjct 459 TGAAGTGCCGTAT-GATTGAAACCGGAGAGAACGGTCGAACCGGAAAGATCGAGAGGGTA 517
Query 235 TATGCAGCCGAACCGGTTTGCAAGT-TTTTCTT-A-A-ACCGTGGTG-TCAAGTCAGGTT 289
||||||||||||||||||||||||| |||| || | | | ||| || | | |||| |
Sbjct 518 TATGCAGCCGAACCGGTTTGCAAGTATTTT-TTGAGAGATAGTGATGGT-A---CAGGAT 572
Query 290 CTCTCACGTCC-CTATTCATGTTGCTCCAAAGCCAAGTCTTTTTCAAAACTTGGACACAT 348
||||| | || || |||||||||||||| | |||||| |||||||| ||||||||| ||
Sbjct 573 CTCTCGTG-CCTCTGTTCATGTTGCTCCATACCCAAGTGTTTTTCAAGACTTGGACAAAT 631
Query 349 CTGAAGGATGTGATATTACAAGAAGAAAAAGATGCATTCAGCTCTGCCCATGACATGAGA 408
|| || ||||||||| || ||| ||| | |||||||||| ||||||||| | ||||| |
Sbjct 632 CTTAAAGATGTGATACTAGAAG--GAAGA-GATGCATTCAACTCTGCCCACGGCATGAAA 688
Query 409 CTCTTCGAATACATTGGGTT-GGA-CGAACAATTCGCTG-GTATGTTAAACCAG-GCAAT 464
||||||||||||| || ||| | ||| ||| |||| || |||| || | | |||||
Sbjct 689 ATCTTCGAATACATAAA-TTCGGATC-AACCATTTGCTGAGT-TGTTTAATC-GTGCAAT 744
Query 465 GTCAGAATCTTCTACCATGATCATGAAGAAGATTTTCGAAGTTTACAAAGGATTCAAAGA 524
||| ||| |||| |||||||||||||||||| || | || || || | |||||| ||||
Sbjct 745 GTCGGAACCTTCCACCATGATCATGAAGAAGGTTCTAGACGTATATAGAGGATTTGAAGA 804
Query 525 TGTAAATACTTTAGTTGATATTGGGGGAGGACTTGGCACCATTCTAAATCTT-GTCACTT 583
||| || ||||| || ||| |||| |||||| |||||| || || | || |||||||
Sbjct 805 TGTTAACACTTTGGTGGATGTTGGAGGAGGAAATGGCACTGTTTTAGGT-TTAGTCACTT 863
Query 584 CCAAGTATCCTCAAATTAAGGGTATCAATTTCGATCT-AGC-CACGGTATTAGCT-AATG 640
| ||||||||||| || || ||| | |||||||| || ||| || | | ||| | || |
Sbjct 864 CTAAGTATCCTCATATCAAAGGTGTTAATTTCGA-CTTAGCTCAAGTT-TTAACCCAA-G 920
Query 641 CTCCATTTTATTCAGGAGTGGAGCATGTATCGGGAGATATGTTTATAGAAGTTCCAAAAG 700
|||| |||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||| |
Sbjct 921 CTCCTTTTTATCCAGGAGTCGAGCATGTATCTGGAGACATGTTTGTAGAAGTTCCAAAGG 980
Query 701 GAGATGCAATCTTCATGAAATGGATATTACATGACTGGA-ACGACGAAGATTGTGTAAAG 759
||||||| |||| |||||||||||| ||||||| ||| | ||||| |||||| |||||
Sbjct 981 GAGATGCCGTCTTTATGAAATGGATACTACATGATTGGGGA-GACGAGGATTGTATAAAG 1039
Query 760 ATTCTAAAAAACTGTTGGAAGAGTCTTCCGGAAAA-GGGAAAAGTGATAATAGTTGA-TA 817
||||| ||||| |||||||| ||||| |||||||| ||||| | | || || || || |
Sbjct 1040 ATTCTGAAAAATTGTTGGAAAAGTCTACCGGAAAAAGGGAAGATT-ATTATTGTAGAGTT 1098
Query 818 TGGTTACACCATCAG-AACCAAAGAGTGACGACCTTTTCT-CTAACA-TCGTCTTTGGTA 874
|| |||||||| || |||||||| ||| ||| || ||| |||||| | ||||||| |
Sbjct 1099 TG-TTACACCAA-AGGAACCAAAGGGTGGTGAC-TTATCTTCTAACACT-GTCTTTGCCA 1154
Query 875 TGGACATGTTGGTGTTGACACAATGTTCGGGTGGTAAAGTGA-AGTCTTTTTCTCAGTTT 933
||||| ||||| |||| || ||||| || |||||||||| || | ||| |||| |||||
Sbjct 1155 TGGACTTGTTGATGTTAACCCAATGCTCTGGTGGTAAAGAGAGA-TCTCTTTCACAGTTC 1213
Query 934 GA-AGCTTTAGCCTCTGCTTCGGGGTTTCTTAAATGTGAAATCAGT-GCTCTTGCTTATA 991
|| | ||| || | ||| || || |||||| ||||||||||| | | ||||||||||
Sbjct 1214 GAGAA-TTTGGCGTTTGCGTCAGGTTTTCTTCGATGTGAAATCATTTG-TCTTGCTTATT 1271
Query 992 CATATTATGTTATCGAAATCCACAA 1016
| |||| |||||||||| |||||||
Sbjct 1272 CGTATTCTGTTATCGAATTCCACAA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5