BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353719
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24280.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1236 0.0
> AT2G24280.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:10333284-10337128 FORWARD LENGTH=3024
Length=3024
Score = 1236 bits (669), Expect = 0.0
Identities = 1231/1496 (82%), Gaps = 63/1496 (4%)
Strand=Plus/Plus
Query 4 GAGAGAATGTCAGCTTGTTTATGTCTTGTATTCCTCTTCTTAACTGTTGTTGCAGAAGCA 63
|||| |||||| || ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct 1333 GAGAAAATGTCTGCCTGTTTGTGTCTTGTTTTCCTGTTCTTCTCTATTGTTGCAGAAGCA 1392
Query 64 AAGTATCCTCCTGGAGG-TTCCTACCATCTTT-TATCTTTGAGA--AAAAACAGTAAGAC 119
| |||| |||| ||||| |||| ||||||||| | ||| | ||| ||| | || |||
Sbjct 1393 ACGTATTCTCCAGGAGGTTTCC-ACCATCTTTCT-TCTCTAAGACTAAAGA-AG-AAGGT 1448
Query 120 CTCCAAGTCAAAGGCA-GAGTTACCCTTTCACTTTCAGACACGTTACTTCCCTCAGAATC 178
||||||||||| || |||||| || | ||| | || |||||||||||||| ||||
Sbjct 1449 GTCCAAGTCAAA-ACATGAGTTA-CC--T---TTTGAAACTCGTTACTTCCCTCAAAATC 1501
Query 179 TTGACCACTTTAGTTTCCA-ACCAGAGAGCTACAGAA-TCTTCCATCAGAAGTACCTCAT 236
|||||||||| ||||| || |||||| ||||||| || ||||||| ||||||||||||||
Sbjct 1502 TTGACCACTTCAGTTT-CACACCAGACAGCTACA-AAGTCTTCCACCAGAAGTACCTCAT 1559
Query 237 CAGCAGCCATTTCTGGCGCAAAGGTGGCCCCATCTTTGTCTACACAGGCAATGAAGGTGA 296
|| || || ||||||||| |||||||| ||||||||||| ||||| || |||||||| ||
Sbjct 1560 CAACAACCGTTTCTGGCGAAAAGGTGGTCCCATCTTTGTTTACACTGGAAATGAAGGAGA 1619
Query 297 CATTGAATGGTTTGCTTCCAACACCGGCTTCATGTTGGACATTGCTCCCAAGTTCCAGGC 356
||| || |||||||||||||||||||| |||||| |||| |||||||||||||||| |||
Sbjct 1620 CATCGACTGGTTTGCTTCCAACACCGGTTTCATGCTGGATATTGCTCCCAAGTTCCGGGC 1679
Query 357 TCTTCTTGTCTTT-ATCGAACATAGATTCTATGGAG-----A-G-----T----CGAAGC 400
||||||||| ||| || ||||| | |||||||||| | | | ||||
Sbjct 1680 TCTTCTTGT-TTTCATTGAACACCGGTTCTATGGAGAATCAACGCCATTTGGGAAGAAGT 1738
Query 401 CGCACAACTTGGCCAAGACATTGGGATACCTAAACTCACAGCAAGCGTTGGCTGATTATG 460
|||| || | || |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1739 CGCATAAGTCAGCTGAGACATTGGGTTACCTAAACTCTCAGCAAGCGTTGGCTGATTATG 1798
Query 461 CAATCTTGATAAGAAGCTTGAAGCAGAATCTATCGTCCGAAGCCTCTCCTGTCGTAGTCT 520
||||| ||||||||||||||||||||||||||||||| || || || ||||| || ||||
Sbjct 1799 CAATCCTGATAAGAAGCTTGAAGCAGAATCTATCGTCTGAGGCATCGCCTGTGGTTGTCT 1858
Query 521 TTGGTGGCTCTTATGGTGGAATGCTTGCAGCGTGGTTCAGGCTAAAGTATCCGCATATCA 580
|||||||||||||||||||||||||||||||||||||||| || |||||||| || || |
Sbjct 1859 TTGGTGGCTCTTATGGTGGAATGCTTGCAGCGTGGTTCAGACTCAAGTATCCCCACATAA 1918
Query 581 CAATTGGTGCATTAGCTTCCTCTGCTCCAATTCTGCAGTTT-GATAAGATTGTTCCGTCT 639
|||| |||||||| || ||||| |||||||| || || ||| ||||| ||||| || | |
Sbjct 1919 CAATCGGTGCATTGGCATCCTCCGCTCCAATACTTCA-TTTCGATAACATTGTACCAT-T 1976
Query 640 T-CAAGCTTTTATAACGTCGTTTCTCAGGATTTCAAGGACGCGAGTCTTAACTGTTTTGA 698
||||||| ||| | | | ||||||||||||| ||||| || ||| |||| ||||| |
Sbjct 1977 GACAAGCTTCTATGATGCCATTTCTCAGGATTTTAAGGATGCAAGTATTAATTGTTTCAA 2036
Query 699 AGTCATCAAGAAAAGCTGGAGA-GAACTGGAGGTTTTTTCTACCATGAAAGATGGCTTAC 757
||||||||||| ||||||| || || || |||| |||| || |||||| ||||||| |
Sbjct 2037 AGTCATCAAGAGAAGCTGG-GAAGAGCTAGAGGCAGTTTCAACTATGAAAAATGGCTTGC 2095
Query 758 AAGAACTCAGCAAAAAGTTCAGAACTTGCAAGGATCTTCACGCTGTCTAT-CTAGCCTCA 816
|||||||||||||||||||| |||||||||||| ||||| || ||| | |||| |
Sbjct 2096 AAGAACTCAGCAAAAAGTTCCGAACTTGCAAGGGCCTTCATTCTCAATATTC-AGCCAGA 2154
Query 817 AGGT-GGCTA-GAGACAGCCTTTACTGATACAGCAATGGTTAATTACCCAACTCCAGCAA 874
| | || || | | ||| ||| | ||||||| ||||||||||| |||||| |||| |
Sbjct 2155 -GATTGGTTAAGTGG-AGCATTTGTTTATACAGCCATGGTTAATTATCCAACTGCAGCTA 2212
Query 875 ATTTCATGGCTCCACTGCCTGCTTATCCAGTGGAGGAGATGTGCAAGATCATCGACTGGT 934
|||||||||| |||||||||| |||||| || ||| |||||||||||||||||||| |||
Sbjct 2213 ATTTCATGGCGCCACTGCCTGGTTATCCCGTAGAGCAGATGTGCAAGATCATCGACGGGT 2272
Query 935 TTCCTTTAGAAGCCAGCAATCTTGATCGTGCGTTTGCAGCTGCAAGCTTATACTACAACT 994
| ||| || | |||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 2273 TCCCTCGAGGATCCAGTAATCTTGACCGTGCCTTTGCTGCTGCAAGCTTATACTACAACT 2332
Query 995 ATTCAGGTTCAGAGAATTGCTTCGATATTGAA-AACCAAACTGATCCTCATGGACTCAAT 1053
|||| || ||||| || |||||||| || ||| ||| |||||||| ||||||||| ||
Sbjct 2333 ATTCGGGATCAGAAAAATGCTTCGAGATGGAACAAC-AAACTGATGATCATGGACTTGAT 2391
Query 1054 GGTTGGTATTGGCAGGCATGCACAGAGATGGTGATGCCAATAAGCTGTTCAAACCAGAGC 1113
|||||| | | ||||| || |||||||||||||||||||| ||||| || |||||||||
Sbjct 2392 GGTTGGCAATATCAGGCGTGTACAGAGATGGTGATGCCAATGAGCTGCTCGAACCAGAGC 2451
Query 1114 ATGTTTCAACCATTCGAATATGA-TGAAAAAGTAGACCAAGAAGACTGTC-TAA--AGGA 1169
||| | | || | |||| |||| | | | | ||||||| | || | | | || |
Sbjct 2452 ATGCTCCCTCCGTACGAAAATGACTCTGAG-GCATTCCAAGAACAATG-CATGACTAG-A 2508
Query 1170 ATACGGTGTCAAGCCTAGACCACACTGGATCACCACCGAATTTGGCGGACAT-AGAATAG 1228
||||| ||||||||| |||| || ||||||||||| |||||||| ||| || || ||||
Sbjct 2509 -TACGGAGTCAAGCCTCGACCCCATTGGATCACCACAGAATTTGGTGGA-ATGAGGATAG 2566
Query 1229 AGATGGTGTTGAAGAGATTTGGCAGCAACATTATATTCTCCAATGGAATGCAGGATCCAT 1288
||| || ||||||||||||| |||||||| ||||||||||||||||||||||| || |
Sbjct 2567 AGACAGTACTGAAGAGATTTGGAAGCAACATCATATTCTCCAATGGAATGCAGGACCCTT 2626
Query 1289 GGAGCAGAGAAGGGGTTCTGAAGAACATATCGAGCAGCATCATTGCGTTTGTGACCAAGA 1348
||||| | | |||||||||||||||||| || || |||||| ||||| ||||||||||||
Sbjct 2627 GGAGCCGTGGAGGGGTTCTGAAGAACATTTCAAGTAGCATCGTTGCGCTTGTGACCAAGA 2686
Query 1349 AAGGAGCTCACCATACGGATCTCAGGGCTGCTACAAAAGAAGACCCAGAGTGGCTGAAAG 1408
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2687 AAGGAGCTCACCATGCAGATCTCAGGGCTGCTACAAAAGATGACCCAGAGTGGCTGAAAG 2746
Query 1409 AACAGAGGAGGCAAGAAGTTGC-AGAGATAGAGAAATGGATCAGTGAGTATTACAG 1463
| |||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 2747 AGCAGAGGAGGCAAGAGGTTGCCATT-ATAGAGAAATGGATCAGTGAGTATTACAG 2801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5