BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353746
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30680.1 | Symbols: | Initiation factor eIF-4 gamma, MA3 | ... 996 0.0
> AT4G30680.1 | Symbols: | Initiation factor eIF-4 gamma, MA3
| chr4:14958687-14960321 REVERSE LENGTH=873
Length=873
Score = 996 bits (539), Expect = 0.0
Identities = 622/661 (94%), Gaps = 10/661 (2%)
Strand=Plus/Plus
Query 1583 AGGGAAGTGGTGGTCTTATGAACGGTAGACCAAGTGCCCTTGTACAAGGTAATGGTTCCG 1642
|||| ||||| || ||| |||||| |||||||||||||||||| |||||||||||||||
Sbjct 218 AGGGCAGTGGAGGCCTTCTGAACGATAGACCAAGTGCCCTTGTGCAAGGTAATGGTTCCC 277
Query 1643 AA-ATGCCTAAACCTGTTCCTTCCCCGACCAGACCAACTGTGGAGAAGCCAAAGCCACAA 1701
|| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 278 AACA-GCCTAAACCTGTTCCTTCCCCGACCAGACAAACTGTGGAGAAGCCAAAACCACAA 336
Query 1702 CCACAGCCACAGGAGGTGGCTCCTCCTACAG-CTACTAGCTTGAACACTGGAGAGCTCAG 1760
||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||
Sbjct 337 CCACAGCCACAGGAGGTGGCTCCTCCTAC-GACTACTAGCTTGAACACAGTAGAGCTCAG 395
Query 1761 TAGAAAGACTAACTCGCTTTTGGAGGAATATTTCAATGTCCGTCTATTGGATGAGGCATT 1820
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TAGAAAGACCAACTCGCTTTTGGAGGAATATTTCAATGTCCGTCTATTGGATGAGGCATT 455
Query 1821 ACAATGCGTAGAAGAACTGAAAACCCCGTCTTACCATCCCGAGCTCGTCAAGGAAGCTAT 1880
||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 456 ACAATGCATAGAAGAACTGAAAACCCCGTCTTACCATCCTGAGCTTGTCAAGGAAGCTAT 515
Query 1881 CTCCCTCGGCTTGGAGAAGAACCCTCCATGTGTTGAACCAGTGGCGAAACTCTTGGAACA 1940
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 516 CTCCCTCGGCTTGGAGAAGAACCCTCCTTGTGTTGAACCAGTGGCGAAGCTCTTGGAACA 575
Query 1941 TCTGGTCTCTAAGAATGTTCTAACTCCTAAAGACTT-AGGTAATGGTTGTCTGCTCTATG 1999
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 576 TCTGGTCTCTAAGAATGTTCTAACTCCTAAAGACTTAAGG-AATGGTTGTCTGCTCTATG 634
Query 2000 GGTCTATGCTCGATGACATTGGGATCGATCTGCCAAAAGCGCCAAACAACTTTGGGGAGA 2059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GGTCTATGCTCGATGACATTGGGATCGATCTGCCAAAAGCGCCAAACAACTTTGGGGAGA 694
Query 2060 TCATTGGTAGTTTGGTTATGGCCAAAGCATCGGATTTTGAGTTGGTGAAAGAGATTCTAA 2119
|| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 695 TCCTTGGGAGTTTGGTTATGGCCAAAGCATCGGATTCTGAGTTGGTGAAAGAGATTCTAA 754
Query 2120 TGAAAATGG-AGGACGAGTGGTTCAAGAAAGCAGTCTTGAAAGCTGTGAT-AGGGAGTGT 2177
||||||||| || |||| ||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 755 TGAAAATGGGAG-ACGAATGGTTCAAGAAAGCAGTCTTGGAAGCTGTGATGAGG-AGTGT 812
Query 2178 TAGTGAGTCTCTACTGGCTACGCAAGAAGCCGAGGTTGAGGCTTGCCGTAGTTTGGTGTA 2237
||||||||||||||| ||||| ||| || |||||||||||||||||| ||||||||||
Sbjct 813 TAGTGAGTCTCTACTCACTACGGAAGCAGTAGAGGTTGAGGCTTGCCGTGGTTTGGTGTA 872
Query 2238 G 2238
|
Sbjct 873 G 873
Score = 222 bits (120), Expect = 1e-56
Identities = 132/138 (96%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1 ATGCAGCAAGGTGACTCAGTGTTGAGTTTGAGGCCTGGAGGTGGTCGTGGAGGAAGCAGA 60
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 82 ATGCAGCAAGGTGACTCAATGCTGAGCTTGAGGCCTGGAGGTGGTCGTGGAGGAAGCAGA 141
Query 61 CTCTTTGCCCCACGCTTTACCTTATCTTCTTCCTCTGATCTTACCAATGGCGCAGATGCT 120
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 142 CGCTTTGCCCCACGCTTTACCTTATCTTCTTCCTCTGATCTTACCAATGGCGGAGACGCT 201
Query 121 CCTTCTTTTGCCGTTAAG 138
||||||||||||||||||
Sbjct 202 CCTTCTTTTGCCGTTAAG 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111043605540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5