BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353756
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30540.1 | Symbols: | Class I glutamine amidotransferase-li... 1155 0.0
> AT4G30540.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr4:14923327-14925106 FORWARD LENGTH=778
Length=778
Score = 1155 bits (625), Expect = 0.0
Identities = 706/746 (95%), Gaps = 2/746 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAAGCAGGTAAGAAGATACGCTCTATTTCAGGCCACGCCAGATTCTGAGTTCGTG 60
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTGAAGCAGATAAGAAGATACGCTCTATTTCAAGCCACGCCAGATTCTGAGTTCGTG 60
Query 61 AAGGAGATGTACGGAGGCTACTTCAACGTATTTGTGTCAGCTTTCGGAGACGAAGGAGAG 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AAGGAGATGTACGGAGGCTACTTCAACGTATTCGTGTCGGCTTTCGGAGACGAAGGAGAG 120
Query 121 CAATGGGATCTTTTCCGTGTGATAGACGGCGAGTTTCCTCGTGACGACGATCTTGAGAAG 180
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 121 CAATGGGATCTTTTCCGTGTGATCGACGGCGAGTTTCCTCGCGACGAAGATCTTGAGAAG 180
Query 181 TATGACGGATTCGTCATTAGCGGGAGTTTACATGACGCTTTCACAGAAGAGGATTGGATC 240
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGAGGGATTCGTCATTAGTGGGAGTTTACATGACGCTTTCACAGAAGAGGATTGGATC 240
Query 241 ATTGAGCTTTGCACTGTTTGCAAAAAACTTGATGTGATGAAGAAGAAAATTCTTGGCATA 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGAGCTTTGCTCTGTTTGCAAAAAACTTGATGTGATGAAGAAGAAAATTCTTGGCATA 300
Query 301 TGCTTTGGTCACCAGATAATATGTAGAATAAGAGGTGGGAAAGTGGGAAGGGCTCGTAGA 360
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 301 TGCTTTGGTCACCAGATCATATGTAGAGTAAGAGGTGGGAAAGTGGGAAGGGCTCGTAAA 360
Query 361 GGACCAGACCTAGGCCTGGGTAACATAACGATCGTTAAAGATTTGATCAAACCAGGTGGT 420
||||||||| ||||||| |||||||||||||||||| ||||| |||||||||| |||| |
Sbjct 361 GGACCAGACATAGGCCTCGGTAACATAACGATCGTTCAAGATGTGATCAAACCGGGTGAT 420
Query 421 TACTTCGATGAAACCGAGTCATTGTCGATCATAAAATGTCATCGAGACGAAGTACTTGAG 480
||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TACTTCGATCAAATCGAGTCATTGTCGATCATACAATGTCATCGAGACGAAGTACTTGAG 480
Query 481 GCTCCTGAGTCGGCCATAGTCATTGGATTCTCGGA-AAAGTGCGACGTAGAGATATTCTC 539
|||| |||||||| | |||||| |||||||| || ||| |||||||| |||||||||||
Sbjct 481 CCTCCAGAGTCGGCTAGAGTCATAGGATTCTCAGACAAA-TGCGACGTTGAGATATTCTC 539
Query 540 AGTAGAAGATCACTTGCTTTGCTTTCAAGGTCATCCCGAGTATAACAAGGAGATTCTCCT 599
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 AGTGGAAGATCACTTGCTTTGCTTTCAAGGTCATCCCGAGTATAACAAAGAGATTCTCCT 599
Query 600 TGAGATCATTGATCGTGTCCACAAGATCAAATTTATTGAGGAGGAAATTGTGGAGAAAGC 659
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 600 TGAGATCATTGATCGTGTCCACAAGATCAAATTTGTTGAGGAGGAAATTTTGGAGAAAGC 659
Query 660 AAAGGACTCGATCGAGAAGATTGAACCAGACACGCAGCGTTTACACATGCTTTGCAAGAA 719
|||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AAAGGATTCGATCAAGAAGTTTGAACCAGACACGCAGCGTTTGCACATGCTTTGCAAGAA 719
Query 720 TTTTCTCAAAGGACGAAGAACCCACT 745
|||||| |||||||||||||||||||
Sbjct 720 TTTTCTGAAAGGACGAAGAACCCACT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5