BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353759
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30500.1 | Symbols: | Protein of unknown function (DUF788) ... 809 0.0
> AT4G30500.1 | Symbols: | Protein of unknown function (DUF788)
| chr4:14903487-14904917 FORWARD LENGTH=746
Length=746
Score = 809 bits (438), Expect = 0.0
Identities = 495/523 (95%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCAAGGAGCAAAGAAGCGGAAAGATGAGAACGCTCGACACATGGCTAAGCTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 72 ATGGCGAATCAAGGAGCAAAGAAGAGGAAAGATGAGAACGCTCGACACATGGCTAAGCTC 131
Query 61 CGTCTTATAATGAT-CTGCTGCAACATTTTGTATGTCATAGTGAGGGTGATAATTTCGCA 119
||||| || ||||| || |||||||||||||||||| |||||||||| |||||||||||
Sbjct 132 CGTCTCATTATGATCCT-TTGCAACATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCA 190
Query 120 TTCAAGCCATACCTGGAAACATTGGATTGGTCTTGTGGTAACATCGTTAGGTTACGCCAT 179
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 191 TTCAAGTCATACCTGGAAAAATTGGATTGGTCTTGTGTTAACATCGTTAGGTTACGGGAT 250
Query 180 TCCTTATAAGCTTCTTAATCAAATGGCAAAGCCTAGTGTTAGTGATGATGGTGAACTTCT 239
||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 251 TCCATATAAGCTTCTTCATCAAATGGCAAAGCCTAGTGTTAGTGATGCTGGTGAACTTCT 310
Query 240 TGACGGTGGATTTGACATGAGCACTGGTGGAATGTGTGGATATTTGCATGATGTACTCTA 299
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 311 TGATGGTGGATTTGACATGAGCACTCCTGGAATGTGTGGATATTTGCATGATGTACTCTA 370
Query 300 CATCACCTGCTTTGTGCAGCTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCATATTT 359
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 371 CATCACCTGCTTTGTGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTT 430
Query 360 AGTGATTCCTGCATTTGGAGCCTACAAAGCTTCTGGTCTTATTAAGGGATTATTGTCACA 419
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 431 AGTGATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGACTATTGTCACA 490
Query 420 TGGTTCAGAGGGAGGTGTAGAGGATGAGAAGACTCGCAAAAAGAGGGAGAAGATGGAGAA 479
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TGGTTCAGAGGGAGGTGTTGAGGATGAGAAGACTCGCAAAAAGAGGGAGAAGATGGAGAG 550
Query 480 AAAAGCTTCTAGAGGACAAGTCGTCAAGACAAGATCACGATGA 522
|||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 551 AAAAGCTTCTAGAGGACAAGTCGTTAAGACAAGATCTCGATGA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5