BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353815
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29880.1 | Symbols: PIRL7 | plant intracellular ras group-re... 1740 0.0
AT2G19330.1 | Symbols: PIRL6 | plant intracellular ras group-re... 929 0.0
AT2G19340.1 | Symbols: | Oligosaccharyltransferase complex/mag... 538 4e-152
> AT4G29880.1 | Symbols: PIRL7 | plant intracellular ras group-related
LRR 7 | chr4:14607078-14608379 REVERSE LENGTH=1122
Length=1122
Score = 1740 bits (942), Expect = 0.0
Identities = 1066/1124 (95%), Gaps = 16/1124 (1%)
Strand=Plus/Plus
Query 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATATGCGAAGATGCATATCAGTATCAGCAATTACATGGACAAAAGGATCACATGATG 60
Query 61 ACAATGATGATGATGGACTTGAGCACATCACCACCCTCATCACCCA-TTTCACCAT-C-- 116
||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |
Sbjct 61 ACAATGATGATGATGGACTTGAGTACATCACCACCATCATCA-CCACTTTCACCATCCTT 119
Query 117 -T--------TCACCATCATACAATAACAACGAGGAAGATAGACTTGAGGTTGTGAATTT 167
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 120 ATCGCCAAAGTCACCATCATACAATAACAACGAGGAAGAGAGACTAGAGGTTGTGAATTT 179
Query 168 GAGTGGCATGGCATTGCAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAA 227
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGTGGCATGGCATTACAATCTCTCCCAAATCCTTCCCTCAATTTGGCAAATATTTGCAA 239
Query 228 GCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCGAGATTACT 287
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GCTTGATCTCTCCAACAATCATATCAAGAAAATACCAGAATCTCTAACAGCAAGATTACT 299
Query 288 CAACTTGATAGCATTAGATATTCACTCTAACCAGATCAAAGCTCTTCCAAACTCCATTGG 347
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CAACTTGATAGCATTGGATATTCACTCAAACCAGATCAAAGCTCTTCCAAACTCCATTGG 359
Query 348 TTGTCTCTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCA 407
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGTCTTTCTAAGCTCAAGATCCTTAATGTCTCCGGCAACTTTCTCGTTTCCCTCCCCCA 419
Query 408 AACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTATTCAAAATTGCAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAG 479
Query 468 ATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAGGAAGCTCTGTGTCAACTCAAA 527
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 ATTACCAGACAACATAGGCTTAGAACTAACCAATCTGAAAAAGCTCTGTGTCAACTCAAA 539
Query 528 CAAGCTCATTAGCCTACCAACCACCATCACCTACCTCACTTCCCTACGTGTCCTCGATGC 587
||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct 540 CAAGCTCATTAGCCTACCAGCCACCATCACCTGCCTCACTTCCCTGCGTGTCCTCGATGC 599
Query 588 TCGTCTCAATTGCCTTATGATCCTCCCGGAGGACCTCGAGAACCTCATCAACCTCGAGAT 647
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 600 TCGTCTCAATTGCCTTATGATCCTCCCTGAGGACCTCGAGAACCTCATCAACCTCGAAAT 659
Query 648 CCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCAATGTCAGTCAGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCT 719
Query 708 CCTGAACCTCCTCGAGCTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCCAT 767
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 CCTGAACCTCCTCGAACTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCTAT 779
Query 768 TGGATGCATGAGGCGGCTGAGGAAA-CTGAGCGCAGAGGGAAACCCACTCGTGTCCCCAC 826
||||||||||||||| || | |||| |||||||| || |||||||||||||| |||||||
Sbjct 780 TGGATGCATGAGGCGCCT-ACGAAAACTGAGCGCGGAAGGAAACCCACTCGTCTCCCCAC 838
Query 827 CCATTGAGGTTGTGGAGCAGAGCTTGCAGGCAGTGAGAGAGTATCTAAGCCAAAAGATGA 886
|||||||||||||||| ||||||||||| || ||| |||||||||| |||||||||||||
Sbjct 839 CCATTGAGGTTGTGGAACAGAGCTTGCATGCGGTGCGAGAGTATCTGAGCCAAAAGATGA 898
Query 887 ATGGTAAACTGGTGAACAGCGCGGCAAAGAAGAAGACATGGGGTTTCCGTAAACTGGTCA 946
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 899 ATGGTAAACTGGTGAACACCGCAGCAAAGAAGAAGACATGGGGTTTCCGTAAACTAGTCA 958
Query 947 AGTATGGGACATTCAATGGCAGATCAAGAGCTTGGACCAGAGAAGAGAGAGAAGGTCTCA 1006
|||| ||||||||||||||||||||||| | ||||||||| |||||| ||||||| ||||
Sbjct 959 AGTACGGGACATTCAATGGCAGATCAAGGGTTTGGACCAGGGAAGAGCGAGAAGGGCTCA 1018
Query 1007 TCATGCCCGAGTACCGTCCCATTGATATCCTAACTTCGACCAAGTTTCCTGTAATGTGCT 1066
||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 1019 TCATGCCTGAGTACCGTCCCATTGATATCCTAACTTCCACCAAGTTTCCTGTGACGTGCT 1078
Query 1067 CACCTCGGCGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA 1110
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 CACCTCGACGTCTCTTCTCCCCAAGAACCTATTTCAGCAGATAA 1122
> AT2G19330.1 | Symbols: PIRL6 | plant intracellular ras group-related
LRR 6 | chr2:8372947-8374453 FORWARD LENGTH=1143
Length=1143
Score = 929 bits (503), Expect = 0.0
Identities = 866/1040 (83%), Gaps = 30/1040 (3%)
Strand=Plus/Plus
Query 86 CATCACCACCCTCATCACCCAT-TTCACCATCTTCACCATCATACAATAACAACGAGGAA 144
||||| |||| || || |||| |||||| |||||||||| |||||| || ||||||
Sbjct 119 CATCATCACCATCGTC-TCCATCATCACCAAAGTCACCATCATTCAATAATAATGAGGAA 177
Query 145 GATAGACTTGAGGTTGTGAATTTGAGTGGCATGGCATTGCAATCTCTCCCAAATCCTTCC 204
|| || || |||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 178 GAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAATCCTTCA 237
Query 205 CTCAATTTGGCAAATATTTGCAAGCTTGATCTCTCCAACAATCAT-ATCAAGAAAATACC 263
|||||||| || | ||||||||||||||||||||||| |||||| || ||| |||||
Sbjct 238 CTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAATAATCATCTTC-AGACCATACC 296
Query 264 AGAATCTCTAACAGCGAGATTACTCAACTTGATAGCATTAGATATTCACTCTAACCAGAT 323
|||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |||||
Sbjct 297 AGAATCACTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAATCAGAT 356
Query 324 CAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGA-TCCTTAATGTCTCCG 382
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 357 CAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTC-TCAATGTCTCCG 415
Query 383 GCAACTTTCTCGTTTCCCTCCCCCAAA-CTATTCAAAATTGCAGGTCACTCGAAGAACTA 441
|||||||||| || ||| | ||| ||| |||| ||| ||||||||||| | |||||||||
Sbjct 416 GCAACTTTCTTGTATCCTTTCCC-AAATCTATCCAACATTGCAGGTCATTGGAAGAACTA 474
Query 442 AACGCCAACTTCAACGAGCTGATTAGATTACCAGACAACATAGGCTTAGAACTAACCAAT 501
|| || ||||||||| | || || |||||||||||| ||| || || ||||| ||||||
Sbjct 475 AATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCATTGGTTTTGAACTCACCAAT 534
Query 502 CTGAGGAAGCTCTGTGTCAACTCAAACAAGCTCATTAGCCTACCAACCACCATCAC-CTA 560
|| |||||||||| | ||||||| |||||||| ||||| || |||| | |||| || | |
Sbjct 535 CTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCAATCTCCATTACTC-A 593
Query 561 CCTCACTTCCCTACGTGTCCTCGATGCTCGTCTCAATTGCCTTATGATCCTCCCGGAGGA 620
|||||| || || |||||||| || || |||||||| ||||| ||||| || ||||| ||
Sbjct 594 CCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCCTCATGATTCTACCGGATGA 653
Query 621 CCTCGAGAACCTCATCAACCTCGAGATCCTCAATGTCAGTCAGAACTTCCAGTATCTTTC 680
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 654 TCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCCAGAATTTCCAGTATCTTTC 713
Query 681 TGCTCTTCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCGAGCTGGATATTAGCTACAA 740
|||||||||||||| || || ||| | |||||||| | ||||| ||| ||||||||||
Sbjct 714 CGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTACAA 773
Query 741 CAAGATAACAGTGTTGCCTGAGTCCATTGGATGCATGAGGCGGCTGAGGAAACTGAGCGC 800
|||||| || || ||||| ||||||||||| |||||||| ||| | ||||| ||||| |
Sbjct 774 CAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGACGGTTAAGGAAGCTGAGTGT 833
Query 801 AGAGGGAAACCCACTCGTGTCCCCACCCATTGAGGTTG-TGGAGCAGAGCTTGCAGGCAG 859
|| |||||||| || ||||| |||||||| ||||| | ||||||||| ||||||| |
Sbjct 834 TGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGT-GATGGAGCAGAATTTGCAGGTGG 892
Query 860 TGAGAGAGTATCTAAGC-CAAAAGATGAATGGTAAACTGGTGAAC-AG-CGCGGCAAAGA 916
||||||||||||| | | || |||||||||||| || || || | | ||||| |
Sbjct 893 TGAGAGAGTATCTGA-CACAGAAGATGAATGGTGG-CTCACCAAGGAGTCCCAGCAAA-A 949
Query 917 AGAAGACATGGGGTTTCCGTAAACTGGTCAAGTATGGGACATTCAATGGCAGATCAAGA- 975
||||| ||||||| ||| ||||| |||| ||||||||||| ||||||||| ||||||||
Sbjct 950 AGAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAA 1009
Query 976 GCTTGGACCAGAGAAGAGAGAGAAGG-TCTCATCATGCCCGAGTACCG-TCCCATTGATA 1033
||| ||| ||||| ||||||||||| | |||||||||| |||||||| ||| || || |
Sbjct 1010 GCT-GGAATAGAGAGGAGAGAGAAGGGT-TCATCATGCCTGAGTACCGCTCC-ATCGACA 1066
Query 1034 -TCCTAACTTCGACCAAG-T-TTCCTGTAATGTGCTCACCTCGGCGTCTCTTCTCCCCAA 1090
|| | ||||| || || | ||| || ||||| ||| || || |||||||| || ||||
Sbjct 1067 GTCTTG-CTTCG-CCTAGGTATTC-TGGAATGTTCTCTCCACGTCGTCTCTTTTCTCCAA 1123
Query 1091 GAACCTATTTCAGCAGATAA 1110
||||||||||||||||||||
Sbjct 1124 GAACCTATTTCAGCAGATAA 1143
> AT2G19340.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr2:8373766-8375809 REVERSE
LENGTH=1164
Length=1164
Score = 538 bits (291), Expect = 4e-152
Identities = 556/683 (81%), Gaps = 22/683 (3%)
Strand=Plus/Minus
Query 423 CAGGTCACTCGAAGAACTAAACGCCAACTTCAACGAGCTGATTAGATTACCAGACAACAT 482
||||||| | ||||||||||| || ||||||||| | || || |||||||||||| |||
Sbjct 1164 CAGGTCATTGGAAGAACTAAATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCAT 1105
Query 483 AGGCTTAGAACTAACCAATCTGAGGAAGCTCTGTGTCAACTCAAACAAGCTCATTAGCCT 542
|| || ||||| |||||||| |||||||||| | ||||||| |||||||| ||||| ||
Sbjct 1104 TGGTTTTGAACTCACCAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCT 1045
Query 543 ACCAACCACCATCACCT-ACCTCACTTCCCTACGTGTCCTCGATGCTCGTCTCAATTGCC 601
|||| | |||| | || ||||||| || || |||||||| || || |||||||| ||||
Sbjct 1044 TCCAATCTCCATTA-CTCACCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCC 986
Query 602 TTATGATCCTCCCGGAGGACCTCGAGAACCTCATCAACCTCGAGATCCTCAATGTCAGTC 661
| ||||| || ||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 985 TCATGATTCTACCGGATGATCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCC 926
Query 662 AGAACTTCCAGTATCTTTCTGCTCTTCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCG 721
|||| |||||||||||||| |||||||||||||| || || ||| | |||||||| | |
Sbjct 925 AGAATTTCCAGTATCTTTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTG 866
Query 722 AGCTGGATATTAGCTACAACAAGATAACAGTGTTGCCTGAGTCCATTGGATGCATGAGGC 781
|||| ||| |||||||||||||||| || || ||||| ||||||||||| |||||||| |
Sbjct 865 AGCTCGATGTTAGCTACAACAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGAC 806
Query 782 GGCTGAGGAAACTGAGCGCAGAGGGAAACCCACTCGTGTCCCCACCCATTGAGGTTG-TG 840
|| | ||||| ||||| | || |||||||| || ||||| |||||||| ||||| | ||
Sbjct 805 GGTTAAGGAAGCTGAGTGTTGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGT-GATG 747
Query 841 GAGCAGAGCTTGCAGGCAGTGAGAGAGTATCTAAGC-CAAAAGATGAATGGTAAACTGGT 899
||||||| ||||||| |||||||||||||| | | || |||||||||||| ||
Sbjct 746 GAGCAGAATTTGCAGGTGGTGAGAGAGTATCTGA-CACAGAAGATGAATGGTGG-CTCAC 689
Query 900 GAAC-AG-CGCGGCAAAGAAGAAGACATGGGGTTTCCGTAAACTGGTCAAGTATGGGACA 957
|| || | | ||||| |||||| ||||||| ||| ||||| |||| |||||||||||
Sbjct 688 CAAGGAGTCCCAGCAAA-AAGAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACG 630
Query 958 TTCAATGGCAGATCAAGA-GCTTGGACCAGAGAAGAGAGAGAAGG-TCTCATCATGCCCG 1015
||||||||| |||||||| ||| ||| ||||| ||||||||||| | |||||||||| |
Sbjct 629 TTCAATGGCGGATCAAGAAGCT-GGAATAGAGAGGAGAGAGAAGGGT-TCATCATGCCTG 572
Query 1016 AGTACCG-TCCCATTGATA-TCCTAACTTCGACCAAG-T-TTCCTGTAATGTGCTCACCT 1071
||||||| ||| || || | || | ||||| || || | ||| || ||||| ||| ||
Sbjct 571 AGTACCGCTCC-ATCGACAGTCTTG-CTTCG-CCTAGGTATTC-TGGAATGTTCTCTCCA 516
Query 1072 CGGCGTCTCTTCTCCCCAAGAAC 1094
|| |||||||| || ||||||||
Sbjct 515 CGTCGTCTCTTTTCTCCAAGAAC 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5