BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353917
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 856 0.0
AT2G20080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 135 3e-31
> AT4G28840.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G20080.1); Has 71 Blast
hits to 69 proteins in 15 species: Archae - 0; Bacteria -
0; Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr4:14240797-14242611
FORWARD LENGTH=750
Length=750
Score = 856 bits (463), Expect = 0.0
Identities = 528/558 (95%), Gaps = 9/558 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGGATCGTCGTCGTCGTCACCGACA---TCTTCTTCTTCTCCGGCAAAGAGAGGG 57
||||||||||| ||||| || ||||| ||| |||||||||||||||||||||||||||
Sbjct 101 ATGGGTGGATCTTCGTCATCATCACCAACATCTTCTTCTTCTTCTCCGGCAAAGAGAGGG 160
Query 58 AAGAACAAGAATGGTTCTGACAAGCCTAAGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AAGAACAAGAATGGTTCTGACAAGCCTAAGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAG 220
Query 118 TTAGAGAAGATTAGATTACACGGCGAGTATAACTGCAACAGCTTCAATACTTACCCTTCT 177
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 221 TTAGAGAAGATTAGATTACACGGCGAGTATAACTGCAACAGCTTCAATACCTACCCTTCT 280
Query 178 TATCATCCCTCAACTTTCAATAATCAGGAGGATGTGAGGATGCAAGGAGGATatccatcc 237
|||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||
Sbjct 281 TATCATCCCTCAACTT--A-T---CAGGAGGATGTGAGGATCCAAGGAGGATATCCATCC 334
Query 238 ataccatcttcatcaccatccttttcatacgcatcatcaccaccatcatcGGGTCCTTAT 297
|||||||| |||||||||||||||||||| ||||||||| ||||| || | | |||||||
Sbjct 335 ATACCATCGTCATCACCATCCTTTTCATATGCATCATCATCACCACCACCAGCTCCTTAT 394
Query 298 GGCTTTCACCCAAACATGATGATGAATGCAAATAATGATCAATACGAGAGAACAACAATA 357
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 395 GGCTTTCATCCGAACATGATGATGAATGCAAATAATGATCAATACGAGAGAACAACCATA 454
Query 358 AGATACGGAGATTCTCAGCCTCACATAGCACCAAGTTGGAACCCGAGCTACGGCATCTTG 417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 455 AGATACGGAGATTCTCAGCCTCACAGAGCACCAAGTTGGAACCCGAGCTACGGCATCTTG 514
Query 418 GAGAGCCAACATTTTGTGGAACCAAACACAACAAGACACTTCTTACATGAGGATCAGAGA 477
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 515 GAGAGCCAGCATTTTGTGGAACCAAACACAACCAGACACTTCTTACATGAGGATCAGAGA 574
Query 478 AATATATCATTGGGATCGGGTATTCAGAACTTCGAAACGAGTGAAGCAAACGAGCTAGAT 537
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 575 AATATATCGTTGGGATCGGGTATTCAGAACTTCGAAACCAGTGAAGCAAACGAGCTAGAT 634
Query 538 TTGGAATTGAGATTGTAA 555
||||||||||||||||||
Sbjct 635 TTGGAATTGAGATTGTAA 652
> AT2G20080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G28840.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:8662941-8665026 REVERSE LENGTH=1002
Length=1002
Score = 135 bits (73), Expect = 3e-31
Identities = 175/221 (79%), Gaps = 20/221 (9%)
Strand=Plus/Plus
Query 29 CATCTTCTTCTTCTCCGGC-A-AAG-AGAGGGAAGAACAAGAATGGTTCTGACAAGCCTA 85
|||| ||||||||||| || | ||| ||||||||| |||||||| || || ||||| |
Sbjct 359 CATCCTCTTCTTCTCCAGCGACAAGAAGAGGGAAG---AAGAATGGCTCCGAGAAGCCGA 415
Query 86 AGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAGTTAGAGAAGATTAGATTACACGGCGAGT 145
||||||| ||||||||||| || || || || || ||||||||||||||||| |||||
Sbjct 416 AGCAGCCACAGAGAGGTCTTGGAGTAGCACAATTGGAGAAGATTAGATTACATGGCGA-A 474
Query 146 AT-AACTGCAACAGCTTCAATACTTACCCTTCTTATCATCCCTCAACTTTCAATAATCAG 204
|| | ||||| |||||| | || | |||| | |||| |||| || ||||
Sbjct 475 ATGAGTTGCAATAGCTTC-A-AC--A-----GTTAT-AACCCT--TCTTTGTATCCTCAG 522
Query 205 GAGGATGTGAGGATGCAAGGAGGATatccatccataccatc 245
||||||||||||||||||||||||||| |||||||||||||
Sbjct 523 GAGGATGTGAGGATGCAAGGAGGATATTCATCCATACCATC 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5