BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354000 Length=1551 Score E Sequences producing significant alignments: (Bits) Value AT4G27970.1 | Symbols: SLAH2 | SLAC1 homologue 2 | chr4:1391829... 2368 0.0 > AT4G27970.1 | Symbols: SLAH2 | SLAC1 homologue 2 | chr4:13918290-13920132 REVERSE LENGTH=1570 Length=1570 Score = 2368 bits (1282), Expect = 0.0 Identities = 1474/1565 (94%), Gaps = 19/1565 (1%) Strand=Plus/Plus Query 1 ATGAATAATCCAAGATCGGTAAGTCCTTTGGTTTCTCCAGCAAACCAC-C----C----A 51 |||||||||||||||||||| ||||||||||||||||||||||||||| | | | Sbjct 11 ATGAATAATCCAAGATCGGTTAGTCCTTTGGTTTCTCCAGCAAACCACTCAGATCTATTA 70 Query 52 G---ATCAACGTCAATCCAGTTGC-GGAGAATTCTCAAGATTAGAGAAACGAAACGGAGC 107 | | |||||||||||| ||| | ||||| |||||||||||||||||||||| |||||| Sbjct 71 GAAAACCAACGTCAATCCGGTT-CTGGAGATTTCTCAAGATTAGAGAAACGAATCGGAGC 129 Query 108 AAGGAAGATGATGAAGTTTCATTCCAAGTCCATGCCCCGAGGTGCCATGTTTCTTGATCA 167 ||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 130 GAGG-A-A-GATGAAGTTTCATTCCAAGTCTATGCCCCGAGGTGCCATGTTTCTTGATCA 186 Query 168 AGAAGCTTCTAGAAACTTCCATGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAA 227 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 187 AGAAGCATCTAGAAACTTCCACGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAA 246 Query 228 GCTCGAACGTCAGATATCGAATTTACGGGGGAAACCCACTGAGTGTTCGTTGCAGGATCA 287 |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 247 ACTCGAACGTCAGATATCGAATTTACGTGGGAAACCCACTGAGAGTTCGTTGCAGGATCA 306 Query 288 TAAAGAGATCACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGA 347 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 TAAAGAGATTACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGA 366 Query 348 ACTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTTTGCCAGAGGACAAAACGTGGCCGTT 407 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 367 GCTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTCTGCCTGAGGACAAAACGTGGCCGTT 426 Query 408 TCTTCTGCGGTTTCCAATCACATCGTATGGGATGTGTCTTGGAGTAAGCAGTCAAGCCAT 467 |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 427 TCTTCTACGGTTTCCAATCACATCATATGGGATGTGTCTTGGAGTAAGTAGTCAAGCCAT 486 Query 468 CATGTGGAAGACCTTAGCAACCACAAACGCCGAGAAGTTCTTGCACGTGACACAAGTGAT 527 ||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||| Sbjct 487 CATGTGGAAGACCTTAGCAACCACAGAGGCAGAGAAGTTCTTGCACGTGACTCAAGTGAT 546 Query 528 CAACCACGTGCTCTGGTGGATCTCCCTCCTTCTCCTCCTCGCCGTCTCTATCACTTACCT 587 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 547 CAACCACGTGCTCTGGTGGATCTCTCTCCTTCTCCTCCTCGCCGTTTCTATCACTTACCT 606 Query 588 CCTCAAAACCATCCTCTACTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCAATCCGAGT 647 | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 607 CTTCAAAACCATCCTCTTCTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCGATCCGAGT 666 Query 648 CAATTTCTTCTTCGCTCCTCTCATATCAATCCTCTTCTTGGCGCTTGGAATCCCACACTC 707 ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 667 CAACTTCTTCTTCGCTCCTCTTATATCAATCCTCTTCTTGGCACTTGGAATCCCACACTC 726 Query 708 CATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCT 767 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 TATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCT 786 Query 768 TGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAACGACGCCTCTCCAAAGTCGC 827 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 787 TGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAAAGACGCCTCTCCAAAGTCGC 846 Query 828 TAACCCTACAAACCACCTTTCGATTGTCGGTAACTTTGCCGGAGCACTTCTAGGAGCATC 887 |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 847 CAACCCTACAAACCACCTTTCCATTGTCGGTAACTTTGCAGGAGCACTTCTAGGAGCATC 906 Query 888 CATGGGGTTGAAAGAAGGACCAATGTTCTTCTTTGCTGT-GGGATTGGCATATTATTTGG 946 |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||||||| Sbjct 907 CATGGGGTTGAAAGAAGGACCAATATTCTTCTTTGCCATAGGG-TTGGCTTATTATTTGG 965 Query 947 TCTTATTTGTGACTCTCTATCAGAGACTTCCCACTAACGAAACCTTACCTAAAGAGCTTC 1006 | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 966 TTTTATTTGTGACTCTCTATCAGAGACTTCCCACGAATGAAACCTTACCTAAAGAGCTTC 1025 Query 1007 ACCCTGtttttttCCTCTTTGTGGCTGCACCGGCTGTCGCTTCCATGGCCTGGACCAAGA 1066 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1026 ACCCTGTTTTCTTCCTCTTTGTGGCTGCACCAGCCGTCGCTTCCATGGCCTGGACCAAGA 1085 Query 1067 TCTCTGCCTCTTTCGATCTCGGCTCGCGCCTGGCTTACTTCATCTCCTTGTTCTTGTACT 1126 |||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||| Sbjct 1086 TCTCTGCCTCTTTCGATCTCGGTTCGCGTCTAGCATACTTCATCTCCTTGTTCTTGTACT 1145 Query 1127 TCTCTCTGGTTTGTCGGATTAACTTTTTCCGTGGATTCAAATTCTCGCTAGCTTGGTGGG 1186 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1146 TCTCTCTGGTTTGTCGGATTAACCTTTTCCGGGGATTCAAATTCTCGCTAGCTTGGTGGG 1205 Query 1187 CTTACACGTTTCCGATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCA 1246 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 CTTACACGTTTCCAATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCA 1265 Query 1247 CGGGAGTAGCAACTAAGATACTGTCGGTTGTGATGTCGGGAGCAGCAACTTTGACAGTGA 1306 ||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct 1266 CGGGAGTGGCAACGAAGATACTATCGGTTGTGATGTCGGGAGCAGCAACTCTGACGGTGA 1325 Query 1307 TAGGTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATG 1366 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1326 TAGCTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATG 1385 Query 1367 ACGTCGTCATTGCCATAAGTGCAGAGCAACCGAAGCAGAGGAGATGGTTCAAACAGCTCA 1426 |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| Sbjct 1386 ACGTTGTCATTGCCATAAGTGCAGAACAACCGAAGCAGAAGAGATGGTTCAAACATCTCA 1445 Query 1427 CAAAAGAAAGTTCTAGAAATAGTGAGAGATGTCTCAAGGTTTTGGACCCGGAAGATAGTC 1486 |||||||||||| | |||||| ||||||||||| |||| ||||||| |||||||||| || Sbjct 1446 CAAAAGAAAGTTATGGAAATAATGAGAGATGTCCCAAGATTTTGGATCCGGAAGATAATC 1505 Query 1487 AAATAGATCTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTGCAGAATTCAA 1546 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1506 AAATAGATTTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTTCAGAATTCAA 1565 Query 1547 ATTAA 1551 ||||| Sbjct 1566 ATTAA 1570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76555831125 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5