BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354000
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27970.1 | Symbols: SLAH2 | SLAC1 homologue 2 | chr4:1391829... 2368 0.0
> AT4G27970.1 | Symbols: SLAH2 | SLAC1 homologue 2 | chr4:13918290-13920132
REVERSE LENGTH=1570
Length=1570
Score = 2368 bits (1282), Expect = 0.0
Identities = 1474/1565 (94%), Gaps = 19/1565 (1%)
Strand=Plus/Plus
Query 1 ATGAATAATCCAAGATCGGTAAGTCCTTTGGTTTCTCCAGCAAACCAC-C----C----A 51
|||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct 11 ATGAATAATCCAAGATCGGTTAGTCCTTTGGTTTCTCCAGCAAACCACTCAGATCTATTA 70
Query 52 G---ATCAACGTCAATCCAGTTGC-GGAGAATTCTCAAGATTAGAGAAACGAAACGGAGC 107
| | |||||||||||| ||| | ||||| |||||||||||||||||||||| ||||||
Sbjct 71 GAAAACCAACGTCAATCCGGTT-CTGGAGATTTCTCAAGATTAGAGAAACGAATCGGAGC 129
Query 108 AAGGAAGATGATGAAGTTTCATTCCAAGTCCATGCCCCGAGGTGCCATGTTTCTTGATCA 167
||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 130 GAGG-A-A-GATGAAGTTTCATTCCAAGTCTATGCCCCGAGGTGCCATGTTTCTTGATCA 186
Query 168 AGAAGCTTCTAGAAACTTCCATGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAA 227
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGAAGCATCTAGAAACTTCCACGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAA 246
Query 228 GCTCGAACGTCAGATATCGAATTTACGGGGGAAACCCACTGAGTGTTCGTTGCAGGATCA 287
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 247 ACTCGAACGTCAGATATCGAATTTACGTGGGAAACCCACTGAGAGTTCGTTGCAGGATCA 306
Query 288 TAAAGAGATCACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGA 347
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TAAAGAGATTACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGA 366
Query 348 ACTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTTTGCCAGAGGACAAAACGTGGCCGTT 407
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 367 GCTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTCTGCCTGAGGACAAAACGTGGCCGTT 426
Query 408 TCTTCTGCGGTTTCCAATCACATCGTATGGGATGTGTCTTGGAGTAAGCAGTCAAGCCAT 467
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 427 TCTTCTACGGTTTCCAATCACATCATATGGGATGTGTCTTGGAGTAAGTAGTCAAGCCAT 486
Query 468 CATGTGGAAGACCTTAGCAACCACAAACGCCGAGAAGTTCTTGCACGTGACACAAGTGAT 527
||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||
Sbjct 487 CATGTGGAAGACCTTAGCAACCACAGAGGCAGAGAAGTTCTTGCACGTGACTCAAGTGAT 546
Query 528 CAACCACGTGCTCTGGTGGATCTCCCTCCTTCTCCTCCTCGCCGTCTCTATCACTTACCT 587
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 547 CAACCACGTGCTCTGGTGGATCTCTCTCCTTCTCCTCCTCGCCGTTTCTATCACTTACCT 606
Query 588 CCTCAAAACCATCCTCTACTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCAATCCGAGT 647
| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 607 CTTCAAAACCATCCTCTTCTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCGATCCGAGT 666
Query 648 CAATTTCTTCTTCGCTCCTCTCATATCAATCCTCTTCTTGGCGCTTGGAATCCCACACTC 707
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 667 CAACTTCTTCTTCGCTCCTCTTATATCAATCCTCTTCTTGGCACTTGGAATCCCACACTC 726
Query 708 CATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCT 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCT 786
Query 768 TGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAACGACGCCTCTCCAAAGTCGC 827
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 787 TGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAAAGACGCCTCTCCAAAGTCGC 846
Query 828 TAACCCTACAAACCACCTTTCGATTGTCGGTAACTTTGCCGGAGCACTTCTAGGAGCATC 887
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 847 CAACCCTACAAACCACCTTTCCATTGTCGGTAACTTTGCAGGAGCACTTCTAGGAGCATC 906
Query 888 CATGGGGTTGAAAGAAGGACCAATGTTCTTCTTTGCTGT-GGGATTGGCATATTATTTGG 946
|||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||
Sbjct 907 CATGGGGTTGAAAGAAGGACCAATATTCTTCTTTGCCATAGGG-TTGGCTTATTATTTGG 965
Query 947 TCTTATTTGTGACTCTCTATCAGAGACTTCCCACTAACGAAACCTTACCTAAAGAGCTTC 1006
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 966 TTTTATTTGTGACTCTCTATCAGAGACTTCCCACGAATGAAACCTTACCTAAAGAGCTTC 1025
Query 1007 ACCCTGtttttttCCTCTTTGTGGCTGCACCGGCTGTCGCTTCCATGGCCTGGACCAAGA 1066
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1026 ACCCTGTTTTCTTCCTCTTTGTGGCTGCACCAGCCGTCGCTTCCATGGCCTGGACCAAGA 1085
Query 1067 TCTCTGCCTCTTTCGATCTCGGCTCGCGCCTGGCTTACTTCATCTCCTTGTTCTTGTACT 1126
|||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1086 TCTCTGCCTCTTTCGATCTCGGTTCGCGTCTAGCATACTTCATCTCCTTGTTCTTGTACT 1145
Query 1127 TCTCTCTGGTTTGTCGGATTAACTTTTTCCGTGGATTCAAATTCTCGCTAGCTTGGTGGG 1186
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1146 TCTCTCTGGTTTGTCGGATTAACCTTTTCCGGGGATTCAAATTCTCGCTAGCTTGGTGGG 1205
Query 1187 CTTACACGTTTCCGATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCA 1246
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CTTACACGTTTCCAATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCA 1265
Query 1247 CGGGAGTAGCAACTAAGATACTGTCGGTTGTGATGTCGGGAGCAGCAACTTTGACAGTGA 1306
||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 1266 CGGGAGTGGCAACGAAGATACTATCGGTTGTGATGTCGGGAGCAGCAACTCTGACGGTGA 1325
Query 1307 TAGGTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATG 1366
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TAGCTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATG 1385
Query 1367 ACGTCGTCATTGCCATAAGTGCAGAGCAACCGAAGCAGAGGAGATGGTTCAAACAGCTCA 1426
|||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 1386 ACGTTGTCATTGCCATAAGTGCAGAACAACCGAAGCAGAAGAGATGGTTCAAACATCTCA 1445
Query 1427 CAAAAGAAAGTTCTAGAAATAGTGAGAGATGTCTCAAGGTTTTGGACCCGGAAGATAGTC 1486
|||||||||||| | |||||| ||||||||||| |||| ||||||| |||||||||| ||
Sbjct 1446 CAAAAGAAAGTTATGGAAATAATGAGAGATGTCCCAAGATTTTGGATCCGGAAGATAATC 1505
Query 1487 AAATAGATCTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTGCAGAATTCAA 1546
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1506 AAATAGATTTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTTCAGAATTCAA 1565
Query 1547 ATTAA 1551
|||||
Sbjct 1566 ATTAA 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5