BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354063
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27380.1 | Symbols: | unknown protein; Has 30201 Blast hits... 344 4e-94
> AT4G27380.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13701244-13703165
FORWARD LENGTH=779
Length=779
Score = 344 bits (186), Expect = 4e-94
Identities = 237/261 (91%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 1 ATGACGAAGAAAAGGAACAAGAAGAATAGAGACGACGACGTTTCCATGGACGTTTCCGAA 60
||||||||||| ||||||||||||||||||||||| || | ||||||||||||||| |||
Sbjct 97 ATGACGAAGAAGAGGAACAAGAAGAATAGAGACGAGGAAGCTTCCATGGACGTTTCTGAA 156
Query 61 TCTCAGAGCGTCTCCGAAGCAGCTGCTCCTCAAGCCATGGATACTACGGAGACCGGTGAC 120
|||||||||||||| | | |||| ||||||||| ||||| ||||||||||||||||||
Sbjct 157 TCTCAGAGCGTCTCTG-A--AGCTACTCCTCAAGTGATGGACACTACGGAGACCGGTGAC 213
Query 121 GGGAAACTAGCTGCTCGTGCTCGTAGCTTGATAAGCGCGAGGAAAGGAAAACCGATGAAG 180
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 214 GGGAAACTAGCTTCTCGTGCTCGTAGCTTGATGAGCACGAGGAAAGGAAAACCGATGAAG 273
Query 181 AGAACGAGGAATGCAA-GTAATATGAAAGCCATGGCTGTAGCCATGGACACTATGGAAAC 239
||||||| || ||||| | ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 274 AGAACGAAGATTGCAATG-AATATGAAAGCTGTGGCTGTAGCCATGGACACTACGGAAAC 332
Query 240 CGGAGACGTGAAACTAGCTAC 260
||| |||||||||||||||||
Sbjct 333 CGGTGACGTGAAACTAGCTAC 353
Score = 298 bits (161), Expect = 3e-80
Identities = 181/191 (95%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 230 CTATGGAAACCGGAGACGTGAAACTAGCTACTCTTGCTCGTAACCCGACAAGCATGAAGA 289
||| |||||||||| || ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 377 CTACGGAAACCGGATACCTGAAACTAGCTACTCTTTCTCGTAACCCGACAAACATGAAGA 436
Query 290 GAACGAAGAATGCAAGGAAGATGAAAGCTGTGGCTAAAGCTATAGCGTTGAGCGAGAAGT 349
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 437 GAACAAAGAATGCAAGGAAGATGAAAGCCGTGGCTAAAGCTATAGCGTTGAGCGAGAAGT 496
Query 350 ATGAAGCAAAAGCTACAAAGGACAAAACCAAAACTCTCAGAACTCTTTCAGCCAAGAAAT 409
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 497 ATGAAGCGAAAGCTACAAAGGACAAAACCAAAACCCTCAGAACTCTTTCGGCCAAGAAAT 556
Query 410 TGTACGAGTGA 420
|||||||||||
Sbjct 557 TGTACGAGTGA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5