BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354113

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26820.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   798    0.0   
  AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein ...   472    4e-132


> AT4G26820.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr4:13493453-13494181 
REVERSE LENGTH=729
Length=729

 Score =  798 bits (432),  Expect = 0.0
 Identities = 561/623 (90%), Gaps = 10/623 (2%)
 Strand=Plus/Plus

Query  1    ATGGATGATGAA-ATAAGCTTCGTTGAAGAGATGAATCAACGGCTTCTAATAACCGTCAC  59
            |||||||||||| | || | | |||||||| |||||||||| |||||| |||||||||| 
Sbjct  1    ATGGATGATGAACA-AAACCTGGTTGAAGAAATGAATCAACAGCTTCTGATAACCGTCAT  59

Query  60   CGATACCGAACAAGTCCCCGAACTCCAATCAATATCATCACGAAACGACCAAGAATCCGA  119
             ||||||||| ||||||| ||||||| | ||||||||||||| | | |||||||||||||
Sbjct  60   TGATACCGAAAAAGTCCCGGAACTCCGACCAATATCATCACGGAGCCACCAAGAATCCGA  119

Query  120  ACCAGCTAACATCTCACAATGGTCACTACTCTTCAAACTCTTTCTAGCCATCACCATCAT  179
            ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct  120  ACCAGCTAATATCTCACACTGGTCACTACTTTTCAAACTCTTTCTAGCCATCACGATCAT  179

Query  180  GGGTGCTTGCGTAGCATGTGTCTCGTTTATCATATTGATTACACCAACTCCACCCACCGT  239
            ||||||||| |||||| ||||  ||||| ||||||||||||| |||||||| ||||| ||
Sbjct  180  GGGTGCTTGTGTAGCAGGTGTGACGTTTGTCATATTGATTACGCCAACTCCCCCCACAGT  239

Query  240  TCACGTACAATCCATGCATATATCCTTCGCCAACCACAATCTACCGGTCTGGTCCGCAAC  299
             ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  240  ACACGTACAATCAATGCATATATCGTTCGCCAACCACAATCTCCCGGTCTGGTCCGCAAC  299

Query  300  GTTCTCTATCAAAAATCCTAACGAGAAACTCCACGTCACGTACCAGAATCCTTCGGTGTG  359
            ||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct  300  GTTCTCTATCAAAAACCCTAACGAGAAACTCCATGTCACGTACGAGAATCCTTCAGTGTG  359

Query  360  G-TTGTCTCACCGGGG-AAGACTTGTGTCGACGGTAAGAACCGATTCGTTC-GGACAGAA  416
            | | || ||||||||| ||| || |||||||| | |||| | ||||||||| || |||||
Sbjct  360  GCTGGT-TCACCGGGGAAAG-CTCGTGTCGACCGCAAGAGCTGATTCGTTCTGG-CAGAA  416

Query  417  AGGCGGAGAGGAGAACAAGGTGATTGTGAATG-GAGACGAAACCAAAGTTATCGATGAAG  475
            |||||||||| ||||| |||| ||||| || | || ||||||| ||||||||||||||||
Sbjct  417  AGGCGGAGAGAAGAACGAGGTTATTGTCAA-GAGAAACGAAACAAAAGTTATCGATGAAG  475

Query  476  AGGCGGCTTGGGAAATGGAGGATGAAGTGGCGGTGACAGGAGGTGTGGTTGGTTTTGATA  535
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct  476  AGGCGGCTTGGGAAATGGAGGATGAAGTGGCGGTGACAGGAGGTGTGGTGGGTCTTGATA  535

Query  536  TGGTGTTTTCTGGGAGAGTAGGGTTTTATCCAGGAGCTTCTGCTTTATGGGGAGAACAGT  595
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  536  TGGTGTTTTCTGGGAGAGTAGGGTTTTATCCAGGAACTTCTGCTTTATGGGGAGAACAGT  595

Query  596  ACATGTCAGCTGTTTGTGAAAAT  618
            |||||||||| |||||||| |||
Sbjct  596  ACATGTCAGCCGTTTGTGAGAAT  618


 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 44/46 (96%), Gaps = 0/46 (0%)
 Strand=Plus/Plus

Query  619  ATCTATGGGACAAATAGATCGGTTTTGTCGTTTGATGGTCGACTAG  664
            ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  652  ATCTATGGGACAAATAGATCGGTTTTGTCATTCGATGGTCGACTAG  697


> AT4G26810.1 | Symbols:  | SWIB/MDM2 domain superfamily protein 
| chr4:13492078-13492932 REVERSE LENGTH=640
Length=640

 Score =  472 bits (255),  Expect = 4e-132
 Identities = 278/289 (96%), Gaps = 2/289 (1%)
 Strand=Plus/Plus

Query  673  AGGTTGAAGAAGGCTATAACGGATAATCCAAAGAAGCTTGGGAATTTGATTGACCTCGTT  732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  163  AGGTTGAAGAAGGCTATAACGGATAATCCAAAGAAGCTTGGGAATTTGATTGACCTCGTG  222

Query  733  AATCTTCCATCGACTCTACGTGAG-TTCGTTGGTCAATCTCAGATTTCCCGTCTGGGTTG  791
            ||||||||||| |||||||| ||  || ||||||||||||||||||||||||||||||||
Sbjct  223  AATCTTCCATCTACTCTACG-GAACTTTGTTGGTCAATCTCAGATTTCCCGTCTGGGTTG  281

Query  792  TTTCATGCGTGTCTGGTCCTATATCAAGACCAACAATCTTCAGGATCCTAAGAACAAGAA  851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  TTTCATGCGTGTCTGGTCCTATATCAAGACCAACAATCTTCAGGATCCTAAGAACAAGAA  341

Query  852  TGTGGTAATTTGTGATGAGAAGCTCAAGAGCATTTTGCTCGGGAAACAGCGAGTGGAGCT  911
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  342  TGTGGTGATTTGTGATGAGAAGCTCAAGAGCATTTTGCTCGGGAAGCAGCGAGTGGAGCT  401

Query  912  AGTCGAGCTTCCTTCTCTTATCAAGTTGCATTTTCCTAAAGAACCAAAG  960
            |||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct  402  AGTCGATCTTCCTTCTCTTATCAAGTTGCATTTTCCCAAAGAACAAAAG  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47119629886


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5