BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354168
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26210.1 | Symbols: | Mitochondrial ATP synthase subunit G ... 555 1e-157
AT4G29480.1 | Symbols: | Mitochondrial ATP synthase subunit G ... 272 2e-72
> AT4G26210.1 | Symbols: | Mitochondrial ATP synthase subunit
G protein | chr4:13281937-13283402 FORWARD LENGTH=761
Length=761
Score = 555 bits (300), Expect = 1e-157
Identities = 347/370 (94%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCGAAGTTGCTACAATTGAAATCCAAGGCCTGTGAAGCATCGAAGTTTGTGTCG 60
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 109 ATGGCATCAAAGTTGCTACAATTGAAATCCAAGGCATGTGAAGCATCAAAGTTTGTTTCC 168
Query 61 AAGCACGGCACAACTTACTACAAACAGTTGCTGGAGAAGAACAAGCA-GTATATCCAGGA 119
||||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 169 AAGCATGGAACAACTTACTACAAACAGTTGCTGGATAAGAACAAG-ATGTATATCCAGGA 227
Query 120 GCCAGCCACTGTAGAGAAATGCAATGAGTTGTCTAAGCAGCTTCTTTACACTCGTCTTGC 179
|||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 228 GCCAGCTACTATAGAGAAATGCAATGAATTGTCTAAGCAGCTTCTCTACACTCGTCTTGC 287
Query 180 GAGCATTCCTGGGCGTTATGAGTCATTTTGGAAGGAAGTCGATCACGTGAAGGGCTTATG 239
|||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 288 TAGCATTCCTGGGCGTTCTGAGTCATTTTGGAAGGAAGTCAATCACGTGAAGGGTTTATG 347
Query 240 GAAGAATCGGGCGGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTTTTTGGTTTAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 348 GAAGAATCGGGCGGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTTTTTGGTCTGGA 407
Query 300 ATGCTTTGCTTGGTACTGTGCTGGAGAGATCGTAGGAAGGGGCTTCACTTTCACCGGCTA 359
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 408 ATGCTTTGCGTGGTACTGTGCAGGAGAGATTGTAGGAAGGGGCTTCACTTTCACCGGCTA 467
Query 360 CTACCCTTGA 369
||||||||||
Sbjct 468 CTACCCTTGA 477
> AT4G29480.1 | Symbols: | Mitochondrial ATP synthase subunit
G protein | chr4:14486041-14487777 REVERSE LENGTH=725
Length=725
Score = 272 bits (147), Expect = 2e-72
Identities = 302/376 (80%), Gaps = 14/376 (4%)
Strand=Plus/Plus
Query 1 ATGGCATCGAAGTTGCTACAA-TTGAAATCCAAGGCCTGTGAAGCATCGAAGTTTGTGTC 59
||||||||||||||| ||||| || |||| ||||| ||||| || || ||||||||| |
Sbjct 133 ATGGCATCGAAGTTGATACAAGTT-CAATCAAAGGCATGTGAGGCTTCAAAGTTTGTGGC 191
Query 60 GAAGCACGGCACAACTTACTACAAACAGTTGCTGGAGAAGAACAAGCAGTATATCCAGGA 119
||||| || || | ||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 192 TAAGCATGGAACTTCCTACTACAGACAGCTGTTGGAGAAGAACAAGCAGTATATCCAGGA 251
Query 120 GCCAGCCACTGTAGAGAAATGC-AATGAGTTGTCTAAGCAGCTT-CTTTACACTCGTCTT 177
|| |||||||| ||||| ||| || ||||||||||||||| || || ||||| ||||||
Sbjct 252 ACCTGCCACTGTTGAGAAGTGCCAA-GAGTTGTCTAAGCAG-TTGCTCTACACCCGTCTT 309
Query 178 GCGAGCATTCCTGGGCGTTATGAGTCATTTTGGAAGGAAGTCGA-TCACGTGAAGGGCTT 236
|| |||||||| || || ||||| | || ||||||||||| || | ||| ||| | |
Sbjct 310 GCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGACT-ACGCAAAGAACCT 368
Query 237 ATGGAAGAATCGGG-C-GGATTTGAAGGTTGAAGATGCTGGAATAGCTGCACTT-TTTGG 293
||||||||| | | | || | ||||||| |||||||| ||||| |||||| || |||||
Sbjct 369 ATGGAAGAA-CAGATCCGG-TCTGAAGGTAGAAGATGCAGGAATCGCTGCA-TTGTTTGG 425
Query 294 TTTAGAATGCTTTGCTTGGTACTGTGCTGGAGAGATCGTAGGAAGGGGCTTCACTTTCAC 353
| | ||||||||||| ||||| || || || || |||| || || || ||||| |||||
Sbjct 426 TCTCGAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCTTCAC 485
Query 354 CGGCTACTACCCTTGA 369
||||| ||||| |||
Sbjct 486 AGGCTATTACCCATGA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5