BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354188
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25990.2 | Symbols: CIL | CCT motif family protein | chr4:13... 1434 0.0
> AT4G25990.2 | Symbols: CIL | CCT motif family protein | chr4:13191690-13193543
REVERSE LENGTH=1477
Length=1477
Score = 1434 bits (776), Expect = 0.0
Identities = 1011/1122 (90%), Gaps = 25/1122 (2%)
Strand=Plus/Plus
Query 28 GCCTATAGCTTTGAGTTAGAAATGGTGAAATCGCCGCCGTCACACAACACTCCTTCACCG 87
||||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 13 GCCTATAGCTTCGAGTTGGAAATGATGAAATCGCCGCCGTCAAACAACACTCCTTCACCG 72
Query 88 TCATCTACAATCTCCGAGTCAAACTCTCCTCCGTTCTCAATCTCCACGAGAAGGCCACGA 147
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TCATCTACAATCTCTGAGACAAACTCTCCTCCGTTCTCAATCTCCACGAGAAGGCCACGA 132
Query 148 ACTCCACGGAAACGTCCGAACCAAACATACGACGAAGCTGCGGCTCTTCTCTCCACCGCT 207
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 133 ACTCCACGGAAACGTCCCAACCAAACATACGACGAAGCTGCGGCTCTCCTCTCCACCGCT 192
Query 208 TGCCCAAAAATCTTCTCTTCCAAGAAAACAAAAACTCAGATTTTCGGCAATAACAAATCT 267
| ||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||
Sbjct 193 TACCCTAAAATCTTCTCTTCCAAGAAGGCAAAAACTCAGATTTTCGGGACTAATAAATCT 252
Query 268 CCTTTAAGTGCTTACGACGAAGCTTCTCAGTTGCTTCTTCCGTACGCATCCGTCGAGGAG 327
||| | |||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 253 CCTCTCAGTGATTACGACGAAGCTTCTCAGTTGCTTCTTCCGTACGTATCCATCGAGGAG 312
Query 328 AACGATTTTCTGTTCAATCCCACCATTCCAACGAAAGCAGAACACTTCTTAGAGCATAAG 387
||||| |||||||||||||| || |||||||||||| ||||||||||||| ||||| |||
Sbjct 313 AACGAGTTTCTGTTCAATCCAACGATTCCAACGAAAACAGAACACTTCTTGGAGCAGAAG 372
Query 388 GAAGTCTGTTTTGATGACTCGGAGGTGATTAGGATTGG-GATTTTCGAAGATTTCGACGC 446
|||||| |||||||||||| |||||||| | || |||| | |||| || |||||||||||
Sbjct 373 GAAGTCAGTTTTGATGACTTGGAGGTGAATGGGTTTGGAG-TTTTAGACGATTTCGACGC 431
Query 447 GGAATCGATTTTGGATGAAGAGACTGAAGAAGGGATCGACAGTTTTATGGGGAATATTGA 506
|||||||||||| |||||||||| ||||||||| || || ||||||||||||||||||||
Sbjct 432 GGAATCGATTTTAGATGAAGAGATTGAAGAAGGAATTGATAGTTTTATGGGGAATATTGA 491
Query 507 ATCGAACCACGGAGATTCTG------G---CAGAATCGGTCGATTAGAGGAAATTATGAA 557
||| || |||||||| | | |||| |||||||||||||||||||||||||
Sbjct 492 ATCTAATGACGGAGATAGAGAAAATTGTTACAGAGTCGGTCGATTAGAGGAAATTATGAA 551
Query 558 GAATGCTTGGAACGGAAGATTTCGTTTAGGGCTAGGTTTGAGGAGTTCTCTCCGAGAAAA 617
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||
Sbjct 552 GAATGCTTGGAACGGAAGGTTTCGTTTAGGGCTTGGTTTGAGAAGTTCTCTCCGACAAAA 611
Query 618 CGATGACGAGAACTGGTGGAAATTTCCCACCGTGGAATTTGATCAGATCTCGCCGAGAAT 677
| | ||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 612 CAACGACGAGAACTGGTGGAAATTTCCTACTGTGGAGTTTGATCAGATTTCGCCGAGAAT 671
Query 678 TCAGACCACCGCCGCCGCA--A-CTGATGATGGTCAATCCAATGTCCTCGATAGTAATAA 734
||||||||||||||||||| | ||||||||||||||||||||||| | ||||||| ||
Sbjct 672 TCAGACCACCGCCGCCGCAGCAGCTGATGATGGTCAATCCAATGTCGTGGATAGTAGCAA 731
Query 735 TAATAAAACCATCGTGACTGCGGAGGGAGGCaagagaaagaagaagaagaagaagaaAAC 794
| |||||| || ||||| |||||||||| ||||| |||||| ||||||||||||||||
Sbjct 732 GATTAAAACGATTGTGACGGCGGAGGGAGACAAGAAAAAGAAAAAGAAGAAGAAGAAAAA 791
Query 795 GAAAGTGGCTCCGGCGGCGGCGGAATTA--GA------A-GTTCCGGACTCGAGTCCAAA 845
|||||||||||||||||||||||||| | || | ||| ||||||||| ||||||
Sbjct 792 GAAAGTGGCTCCGGCGGCGGCGGAATCAAAGAGCTCTGAAGTTACGGACTCGAATCCAAA 851
Query 846 GATGGAGCAGAGAGTGAGTCCGTTGTTGAAGCTCGACTACGATGGGGTTTTAGAGGCTTG 905
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 852 GCTGGAGCAGAGAGTGAGTCCGTTGCTGAAGCTCGACTACGATGGGGTTTTAGAGGCTTG 911
Query 906 GTCAGGTAAGGAGTCACCGTTCTCCCACGAGATTCTGGGTTCCGACGCCGCCGGAGTCGA 965
||||||||||||||||||||||||| |||||||||| ||||| ||||| | |||||||||
Sbjct 912 GTCAGGTAAGGAGTCACCGTTCTCCGACGAGATTCTTGGTTCGGACGCTGACGGAGTCGA 971
Query 966 TTTTCATGCAAGGTTGGGTGAGATAGATTTGTTCGGAGAAAGTGGAATGAGAGAAGCAAG 1025
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 972 TTTTCATGTAAGGTTGGGTGAGATAGATTTGTTCGGAGAAAGTGGTATGAGAGAAGCAAG 1031
Query 1026 TGTGTTAAGGTATAAAGAGAAGCGAAGGAACCGACTCTTCTCCAA-AAGAATCCGATATC 1084
|||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||
Sbjct 1032 TGTGTTAAGGTATAAAGAGAAGCGGAGGAATAGACTCTTCTCCAAGAA-AATCCGATATC 1090
Query 1085 AAGTTCGCAAACTCAACGCTGATCAACGCCCGCGTATGAAGG 1126
|||||||||| |||||||| || |||||||||||||||||||
Sbjct 1091 AAGTTCGCAAGCTCAACGCCGACCAACGCCCGCGTATGAAGG 1132
Score = 99.0 bits (53), Expect = 9e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1124 AGGGACGATTTGTGAGAAGGCCCAACGCAAGGAATTTAAGTGGGCTACGATTATAA 1179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1175 AGGGACGATTTGTGAGAAGGCCCAACGCAAGGAATTTAAGTGGTCTACGATTATAA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5