BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354208
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25810.1 | Symbols: XTR6, XTH23 | xyloglucan endotransglycos... 1391 0.0
AT5G57550.1 | Symbols: XTR3, XTH25 | xyloglucan endotransglucos... 344 8e-94
> AT4G25810.1 | Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase
6 | chr4:13128643-13129884 FORWARD LENGTH=1081
Length=1081
Score = 1391 bits (753), Expect = 0.0
Identities = 827/863 (96%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATGATCAGTTACTCCACCGTTGTGGTTGCTCTGCTTGCTTCTTTTATGATTTGC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 52 ATGGCGATGATCAGTTACTCCACCATTGTGGTTGCTCTGCTTGCTTCTTTTATGATTTGC 111
Query 61 TCTGTTTCCGCCAATTTTCAAGGGGACGTGGAGATAACTTGGGGAGACGGACGTGGACAG 120
||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 112 TCTGTTTCCGCCAATTTTCAACGAGACGTAGAGATAACTTGGGGAGACGGACGTGGACAG 171
Query 121 ATCACCAATAACGGCGATCTTCTCACTCTCTCTCTCGACAAAGCTTCAGGCTCAGGATTC 180
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 172 ATCACAAACAACGGCGATCTTCTTACACTCTCTCTCGACAAAGCTTCAGGCTCAGGATTC 231
Query 181 CAATCCAAGAACGAATATTTGTTTGGTAAAATCGACATGCAGATCAAGCTCGTTGCCGGA 240
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 232 CAATCCAAGAACGAATATTTGTTCGGTAAAATCGACATGCAGATCAAACTCGTTGCCGGA 291
Query 241 AACTCCGCTGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGATCTACATGGGACGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AACTCCGCTGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGATCTACATGGGACGAG 351
Query 301 ATTGA-TTTCGAGTTCTTGGGAAACCTAAGTGGAGATCCTTACACACTTCATACCAATGT 359
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 352 ATTGACTTT-GAGTTCTTGGGAAACCTAAGTGGTGATCCTTACACACTTCATACTAATGT 410
Query 360 CTTTACGCAAGGCAAAGGTGATAGAGAACAACAATTCAAACTCTGGTTCGATCCCACAAG 419
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 411 CTTTACGCAAGGAAAAGGCGATAGAGAACAACAATTCAAACTCTGGTTCGATCCCACTAG 470
Query 420 TGATTTCCACACTTACTCTATCCTATGGAACCCACAACGCATCATATTCTCCGTGGATGG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 TGATTTCCACACTTACTCTATCCTCTGGAACCCACAACGCATCATATTCTCCGTGGATGG 530
Query 480 AACTCCAATAAGAGAATTCAAGAACATGGAATCTCAAGGAACTCTGTTTCCTAAGAATCA 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 531 AACTCCCATAAGAGAATTCAAGAACATGGAATCTCAAGGAACTCTGTTTCCTAAGAACCA 590
Query 540 GCCGATGAGAATGTACTCGAGTCTATGGAACGCTGAAGACTGGGCCACAAGGGGTGGTCT 599
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 591 GCCAATGAGAATGTACTCTAGTCTATGGAACGCTGAAGAATGGGCCACAAGGGGTGGTCT 650
Query 600 CGTCAAAACCGACTGGTCTAAAGCTCCCTTCACCGCTTCCTACCGCGGCTTCAACGAAGA 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 651 CGTCAAAACCGACTGGTCTAAAGCTCCCTTCACTGCTTCCTACCGCGGCTTCAACGAAGA 710
Query 660 AGCTTGCGTCGTAATCAACGGGCAGTCTTCATGCCCAAACGGGTCAGGACAAGGAAGTAG 719
|||||||||||| |||||||| |||||||||||||| |||| |||||||||||| ||||
Sbjct 711 AGCTTGCGTCGTGATCAACGGCCAGTCTTCATGCCCTAACGTGTCAGGACAAGGGAGTAC 770
Query 720 TGGTTCGTGGTTGTCCCAGGAGCTAGACTCGACGGGTCAAGAACAGATGAGATGGGTGCA 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 771 TGGTTCGTGGTTGTCTCAGGAGCTAGACTCGACGGGTCAAGAACAGATGAGATGGGTACA 830
Query 780 GAATAACTACATGATATACAATTACTGTACGGACGCTAAGAGGTTCCCTCAAGGTCTTCC 839
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 GAATAACTACATGATTTACAATTACTGTACGGACGCTAAAAGGTTCCCTCAAGGTCTTCC 890
Query 840 ACGCGAGTGTCT-AGCTGCGTAA 861
||||||||| || ||||||||||
Sbjct 891 ACGCGAGTG-CTTAGCTGCGTAA 912
> AT5G57550.1 | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase
25 | chr5:23304888-23306421 REVERSE LENGTH=1059
Length=1059
Score = 344 bits (186), Expect = 8e-94
Identities = 419/528 (79%), Gaps = 30/528 (6%)
Strand=Plus/Plus
Query 130 AACGGCGATCTTCTCACTCTCTCTCTCGACAAAGCTTCAGGCTCAGGATTCCAATCCAAG 189
||||| || |||||||||||||| ||||||| ||| || ||||| || || ||| |||||
Sbjct 179 AACGGAGAGCTTCTCACTCTCTCCCTCGACAGAGCCTCCGGCTCTGGTTTTCAAACCAAG 238
Query 190 AACGAATATTTGTTTGGTAAAATCGACATGCAGATCAAGCTCGTTGCC-GGAAACTCCGC 248
|| || |||||||| || ||||||||||||||| |||| |||| | || |||||||||||
Sbjct 239 AAAGAGTATTTGTTCGGGAAAATCGACATGCAGCTCAAACTCG-TCCCTGGAAACTCCGC 297
Query 249 TGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGAT-CTACATGGGACGAGATTGATT 307
||||| ||||| || ||||| ||||| || || | ||| |||||||| || ||||
Sbjct 298 CGGAACCGTCACTGCCTACTACTTGAAGTCAAAAGG-TGATACGTGGGACGAAATCGATT 356
Query 308 TCGAG-TTCTTGGGAAACCTAAGTGGAGATCC-T-TACACACTTCATACCAATGTCTTTA 364
||||| ||||| || || |||| ||| ||||| | ||| || | ||||| ||||| | ||
Sbjct 357 TCGAGTTTCTT-GGTAATCTAACTGGTGATCCGTATAC-CA-TGCATACGAATGTGTATA 413
Query 365 CGCAAGGCAAAGGTGATAGAGAACAACAATT-CAAACTCTGGTTCGATCCCACAAG-TGA 422
| ||||||||||||||||||||||||||||| || |||||||||||||| || | |||
Sbjct 414 CTCAAGGCAAAGGTGATAGAGAACAACAATTTCAT-CTCTGGTTCGATCCAACC-GCTGA 471
Query 423 TTTCCACACTTACTCTATCCTATGGAACCCACAACGCATCATATTC-TCCGTGGATGGA- 480
|||||||||||||||| | |||||||||| || | |||| | ||| | || |||| |
Sbjct 472 TTTCCACACTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATG-GTTGATG-AT 529
Query 481 ACTCCAATAAGAGAATTCAAGAA-CATGGAATC-TCAAGGA-ACTCT-GTTTCCTAAGAA 536
| ||| |||||||||||||||| | | || | | | || | || || ||| || ||
Sbjct 530 ATTCCGGTAAGAGAATTCAAGAATC-TACAA-CAT-ATGGGTA-TCCAGTATCC-AA-AA 583
Query 537 T--CAGCCGATGAGAATGTACTCGAGTCTATGGAACGCTGAAGACTGGGCCACAAGGGGT 594
| ||||||||||| | |||||||||||||||||||| || | ||||| ||||||||
Sbjct 584 TTGCAGCCGATGAGGTTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGA 643
Query 595 GGTCTCGTCAAAACCGACTGGTCTAAAGCTCCCTTCACCGCTTCCTAC 642
|||||||| || || |||||||| || || || ||||||||||| |||
Sbjct 644 GGTCTCGTTAAGACTGACTGGTCCAAGGCACCATTCACCGCTTCTTAC 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5