BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354228
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25560.1 | Symbols: AtMYB18, MYB18 | myb domain protein 18 |... 1151 0.0
AT5G52260.1 | Symbols: AtMYB19, MYB19 | myb domain protein 19 |... 416 1e-115
> AT4G25560.1 | Symbols: AtMYB18, MYB18 | myb domain protein 18
| chr4:13052555-13053618 FORWARD LENGTH=897
Length=897
Score = 1151 bits (623), Expect = 0.0
Identities = 737/792 (93%), Gaps = 7/792 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAGACGAAATCTGGAGAGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGAT 60
||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAAGACGAAATATGGAGAGAGACATAGGAAAGGGTTATGGTCACCTGAAGAAGAC 60
Query 61 GAGAAGCTAAGAAGCTTCAAACTCTCTCATGGCCATTCTTGCTGGACCACTGTTCCCATC 120
||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGCTAAGGAGCTTCATCCTCTCTTATGGCCATTCTTGCTGGACCACTGTTCCCATC 120
Query 121 AAAGCTGGGTTGCAAAGGAATGGGAAAAGCTGCAGATTAAGATGGATTAATTACCTAAGA 180
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCTGGGTTACAAAGGAATGGGAAGAGCTGCAGATTAAGATGGATTAATTACCTAAGA 180
Query 181 CCAGGGTTAAAGAGGGATATGATTAGTGCAGAAGAAGAAGATACCATCTTGACGTTTCAT 240
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 181 CCAGGGTTAAAGAGGGATATGATTAGTGCAGAAGAAGAAGAGACTATCTTGACGTTTCAT 240
Query 241 TCTTTCTTGGGTAATAAGTGGTCGCAAATCGC-AAAGTTCTTACCGGGAAGAACAGACAA 299
|||| ||||||||| |||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 241 TCTTCCTTGGGTAACAAGTGGTCGCAAATAGCTAAA-TTCTTACCGGGAAGAACAGACAA 299
Query 300 TGAGATAAAGAACTATTGGCACTCTCATTTGAAAAAGAGATGGCTCAAGTCTCAGAGCTT 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 TGAGATAAAGAACTATTGGCACTCTCATTTGAAAAAGAAATGGCTCAAGTCTCAGAGCTT 359
Query 360 ACAACATCCAAAATCTGTTTCC--TC-TTCTTCATCATCATCATCACTTGTTGCTTGTGG 416
|||| || |||||||| ||||| || ||| || ||||||||||||||||||||||||||
Sbjct 360 ACAAGATGCAAAATCTATTTCCCCTCCTTCGTCTTCATCATCATCACTTGTTGCTTGTGG 419
Query 417 AAAAAGAAATCCGGAAACCTTGATCTGTGA-TCAGGTGATCTCCTTCCAGAGACTTCTAG 475
|||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||
Sbjct 420 AAAAAGAAATCCGGAAACCTTGATCTC-GAATCACGTGTTCTCCTTCCAGAGACTTCTAG 478
Query 476 AGGACAAATCTTCGTCTCCATCACAAGAAAGCAACGGAAATAACAGTTATCAATGTTCTT 535
|| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 479 AGAACAAATCTTCATCTCCCTCACAAGAAAGCAACGGAAATAACAGCCATCAATGTTCTT 538
Query 536 CTGCTCCTGAGATTCCAAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCGGATCCCCATA 595
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 539 CTGCTCCTGAGATTCCAAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCATATCCCCACA 598
Query 596 TCGATTATTCCTCTGATTTTATAGACTCTAAGCACAACCAAGCTCCAAATGTCAAAGAAA 655
||||||||||||||| |||| ||||||||||||| ||||||||||||||| |||| |
Sbjct 599 CCGATTATTCCTCTGAGTTTACCGACTCTAAGCACAGTCAAGCTCCAAATGTCGAAGAGA 658
Query 656 CTGTCTCAGCTTATGAAGAAATGGGTGATGTTGATCAGTTCCATTACACCGAAATGATGA 715
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 CTCTCTCAGCTTATGAAGAAATGGGTGATGTTGATCAGTTCCATTACAACGAAATGATGA 718
Query 716 TCAACAACAGCAACTGGACTCTTAACGACGTCGTGCTTGGTTCCAAGTGTAAGACTCAGG 775
||||||||||||||||||||||||||||| | ||| |||||||||| ||||||| ||||
Sbjct 719 TCAACAACAGCAACTGGACTCTTAACGACATTGTGTTTGGTTCCAAATGTAAGAAGCAGG 778
Query 776 AGCATCATATTT 787
||||||||||||
Sbjct 779 AGCATCATATTT 790
> AT5G52260.1 | Symbols: AtMYB19, MYB19 | myb domain protein 19
| chr5:21220165-21221288 FORWARD LENGTH=872
Length=872
Score = 416 bits (225), Expect = 1e-115
Identities = 498/625 (80%), Gaps = 38/625 (6%)
Strand=Plus/Plus
Query 23 AGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGATGAGAAGCT-AAGAAGCTTCAAA 81
||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||
Sbjct 29 AGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGACCAGAAGCTCAAGA-GTTTCATC 87
Query 82 CTCTCTCATGGCCATTCTTGCTGGACCACTGTTCCCATCAAAGCTGGGTTGCAAAGGAAT 141
||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 88 CTCTCTCGTGGCCATGCTTGCTGGACCACTGTTCCCATCCTAGCTGGATTGCAAAGGAAT 147
Query 142 GGGAAAAGCTGCAGATTAAGATGGATTAATTACCTAAGACCAGGGTTAAAGAGGGA-TAT 200
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 148 GGGAAAAGCTGCAGATTAAGGTGGATTAATTACCTAAGACCAGGACTAAAGAGGGGGTC- 206
Query 201 GATTAGTGCAGAAGAAGAAGATACCATCTTGACGTTT-CATTCTTTCTTGGGTAATAAGT 259
| |||||| |||||||||||| ||||||||||| ||| ||||||| ||||||||| ||||
Sbjct 207 GTTTAGTGAAGAAGAAGAAGAGACCATCTTGAC-TTTACATTCTTCCTTGGGTAACAAGT 265
Query 260 GGTCGCAAATCGCAAAGT-TCTTACCGGGAAGAACAGACAATGAGATAAAGAACTATTGG 318
|||| | || ||||| | | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 266 GGTCTCGGATTGCAAAATAT-TTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGG 324
Query 319 CACTC-TCATTTGAAAAAGAGATGGCTCAAGTCTCAGAGCTTA-C--AACATCCAAA-AT 373
|| || | || |||| |||||||||||||| ||||| | | | | || | ||||| ||
Sbjct 325 CATTCCT-ATCTGAAGAAGAGATGGCTCAAATCTCA-ACCACAACTCAAAAGCCAAATAT 382
Query 374 CTGTTTCCTCTTCTTCATCATCAT-CATCACTTGTTGCTTGTGGAAAAAGAAATCCGGAA 432
| | |||| | ||| || | | ||||| || |||| || |||||||||| ||||
Sbjct 383 CAGA--CCTCA-CAGAATC-TCCTTCTTCACTACTTTCTTGCGGGAAAAGAAATCTGGAA 438
Query 433 ACCTTGATC-TGTGATCAGGTGATCTCCTTCCAGAGACTT-CTAGAGGA-CAAATCTTCG 489
||| | | | ||||| |||||||||||||||| | || | |||| | | || ||||
Sbjct 439 ACCGAAACCCTA-GATCACGTGATCTCCTTCCAGAAATTTTC-AGAGAATCCAA-CTTCA 495
Query 490 TCTCCATCACAA-GAAAGCAACGGAAATAACAGTTATCAATGTTCTTCTGCTCCTGAGAT 548
|| ||||| ||| ||||||||| || |||| | |||| || | | | | | | |
Sbjct 496 TCACCATC-CAAAGAAAGCAAC--AAC-AACA-TGATCA-TGAACAACAG-TAATAAC-T 547
Query 549 T-CC-AAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCGGATCCCCATATCGATTATTCC 606
| || || || ||||||||||| ||| | |||||| |||| || |||||||| |||
Sbjct 548 TGCCTAAA-CTGTTCTTCTCTGAGTGGATCAGTTCTTCAAATCCACACATCGATTACTCC 606
Query 607 TCTGATTTTATAGACTCTAAGCACA 631
|||| ||||| ||| || |||||||
Sbjct 607 TCTGCTTTTACAGATTCCAAGCACA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5