BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354244 Length=669 Score E Sequences producing significant alignments: (Bits) Value AT4G25410.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 935 0.0 > AT4G25410.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:12985755-12987217 FORWARD LENGTH=778 Length=778 Score = 935 bits (506), Expect = 0.0 Identities = 616/667 (92%), Gaps = 15/667 (2%) Strand=Plus/Plus Query 1 ATGGATCCTTATCAGAATCTTAATCCGAAAGGGTACCAGAGACAGAGACCGTTTAGCTCA 60 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 18 ATGGATCCTTATAAGAATCTTAATCCAAAAGGTTACCAGAGACAGAGACCGTTTAGCTCA 77 Query 61 TCCGGCGAGGGCGGCAGCAGCGGCGGCTCAGGTA-TGCCACATGAAACAGATGACAATAA 119 |||||||| | ||| ||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 78 GCCGGCGAGAGTGGCGGCAGCGGCGGCTCCGGTACGGCC-CATGAAACAGATGACAATAA 136 Query 120 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 196 Query 180 ACTCTTTGCTACTCTTCGTACTCAGCT-ACCTCTCAAATACATCAAGGGAAAAAGAGCTG 238 |||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| Sbjct 197 ACTCTTTGCTACTCTTCGTACTCA-CTTACCTCTTAAATACATCAAGGGAAAAAGAGCTG 255 Query 239 TTTCGGATCATGTAAACGGAGCGGTAAATTTCATAAAGGACACGGAAACACGGATTAAAG 298 | |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| Sbjct 256 TGTCGGATCATGTAAATGGAGCGGTAAATTTCATTAAGGACACGGAAGCACGGATTAAAG 315 Query 299 AACTTAGTGCAAGAAGAGACGA-TCTAAGTAGAGAAACAGGTCAGAG-ATATAAATCCAA 356 |||||||||||||||||||||| | ||||||||||||| || || || ||||||||| || Sbjct 316 AACTTAGTGCAAGAAGAGACGAGT-TAAGTAGAGAAACCGGCCA-AGGATATAAATCGAA 373 Query 357 TCCGGATTCAGCAAACAGTACTGGATCCGATTTAGGCAGATCGGAGCCGGCGACTGTGAT 416 ||||||| ||| ||| | |||||||||||| |||||| ||||||||||||||||||||| Sbjct 374 TCCGGATCCAGGAAA-A--ACTGGATCCGATGTAGGCAAATCGGAGCCGGCGACTGTGAT 430 Query 417 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAAATCCTCAGGTCCCGA 476 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 431 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAACTCCTCAGGCCCCGA 490 Query 477 AGCTTTGCCTCTCTCAAGAGTGCTCAAGACACTTCAGGAGAAAGGGCTTGAAGTAATGAG 536 ||||||||| || |||| ||||||| ||||| |||||||||||||||||||||| ||||| Sbjct 491 AGCTTTGCCACTATCAAAAGTGCTCGAGACAATTCAGGAGAAAGGGCTTGAAGTCATGAG 550 Query 537 CTCTCT-CACCACAAGAGTCAATGAGCGGCTTATGCACACTATTCAAGTCGAGGTTAATA 595 ||| || ||| |||||||||||||| |||| ||||||||||||||||| |||||||||| Sbjct 551 CTC-CTTCACTACAAGAGTCAATGATAGGCTCATGCACACTATTCAAGTAGAGGTTAATA 609 Query 596 GTTTCGGATGCATAGACTTAGCT-TGGTTGCAGCAAAAGCTAGTTGAGGATTTGATACTT 654 |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 610 GTTTCGGATGCATAGACTTAT-TATGGTTGCAGCAGAAGCTAGTTGAGGATTTGATACTT 668 Query 655 TCGACGG 661 ||||||| Sbjct 669 TCGACGG 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32350790668 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5