BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354244
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25410.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 935 0.0
> AT4G25410.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:12985755-12987217 FORWARD
LENGTH=778
Length=778
Score = 935 bits (506), Expect = 0.0
Identities = 616/667 (92%), Gaps = 15/667 (2%)
Strand=Plus/Plus
Query 1 ATGGATCCTTATCAGAATCTTAATCCGAAAGGGTACCAGAGACAGAGACCGTTTAGCTCA 60
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 18 ATGGATCCTTATAAGAATCTTAATCCAAAAGGTTACCAGAGACAGAGACCGTTTAGCTCA 77
Query 61 TCCGGCGAGGGCGGCAGCAGCGGCGGCTCAGGTA-TGCCACATGAAACAGATGACAATAA 119
|||||||| | ||| ||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 78 GCCGGCGAGAGTGGCGGCAGCGGCGGCTCCGGTACGGCC-CATGAAACAGATGACAATAA 136
Query 120 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 196
Query 180 ACTCTTTGCTACTCTTCGTACTCAGCT-ACCTCTCAAATACATCAAGGGAAAAAGAGCTG 238
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 197 ACTCTTTGCTACTCTTCGTACTCA-CTTACCTCTTAAATACATCAAGGGAAAAAGAGCTG 255
Query 239 TTTCGGATCATGTAAACGGAGCGGTAAATTTCATAAAGGACACGGAAACACGGATTAAAG 298
| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 256 TGTCGGATCATGTAAATGGAGCGGTAAATTTCATTAAGGACACGGAAGCACGGATTAAAG 315
Query 299 AACTTAGTGCAAGAAGAGACGA-TCTAAGTAGAGAAACAGGTCAGAG-ATATAAATCCAA 356
|||||||||||||||||||||| | ||||||||||||| || || || ||||||||| ||
Sbjct 316 AACTTAGTGCAAGAAGAGACGAGT-TAAGTAGAGAAACCGGCCA-AGGATATAAATCGAA 373
Query 357 TCCGGATTCAGCAAACAGTACTGGATCCGATTTAGGCAGATCGGAGCCGGCGACTGTGAT 416
||||||| ||| ||| | |||||||||||| |||||| |||||||||||||||||||||
Sbjct 374 TCCGGATCCAGGAAA-A--ACTGGATCCGATGTAGGCAAATCGGAGCCGGCGACTGTGAT 430
Query 417 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAAATCCTCAGGTCCCGA 476
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 431 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAACTCCTCAGGCCCCGA 490
Query 477 AGCTTTGCCTCTCTCAAGAGTGCTCAAGACACTTCAGGAGAAAGGGCTTGAAGTAATGAG 536
||||||||| || |||| ||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 491 AGCTTTGCCACTATCAAAAGTGCTCGAGACAATTCAGGAGAAAGGGCTTGAAGTCATGAG 550
Query 537 CTCTCT-CACCACAAGAGTCAATGAGCGGCTTATGCACACTATTCAAGTCGAGGTTAATA 595
||| || ||| |||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 551 CTC-CTTCACTACAAGAGTCAATGATAGGCTCATGCACACTATTCAAGTAGAGGTTAATA 609
Query 596 GTTTCGGATGCATAGACTTAGCT-TGGTTGCAGCAAAAGCTAGTTGAGGATTTGATACTT 654
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 610 GTTTCGGATGCATAGACTTAT-TATGGTTGCAGCAGAAGCTAGTTGAGGATTTGATACTT 668
Query 655 TCGACGG 661
|||||||
Sbjct 669 TCGACGG 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5