BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354257
Length=2277
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25270.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2368 0.0
AT4G25280.1 | Symbols: | P-loop containing nucleoside triphosp... 1219 0.0
> AT4G25270.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:12937253-12938836 REVERSE LENGTH=1584
Length=1584
Score = 2368 bits (1282), Expect = 0.0
Identities = 1441/1519 (95%), Gaps = 6/1519 (0%)
Strand=Plus/Plus
Query 762 GAAACCCAGACATCACCAACAGTTGAAGCAACACAGACAAAATGAATACAACAACAGTGG 821
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 69 GAAACCCAGACATCACCAACAGTTGAAGCAACACAGACAAAACCAATACAACAACAATGG 128
Query 822 ATTCACTTCCCTCTCTTTCACCAAACCATCCCCCACTCCTCTCTTGATCGGAAAACAATC 881
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 129 ATTCACTTCCCTCTCTTTCACCAAACCATCCCCCACTCCTCTCTTGATCGAAAAACAATC 188
Query 882 GATTCACCGGACCCAACTCGAAGCCTTAGACTCCGTCATAACAGACCTCGAAACCTCCGC 941
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 189 CATTCACCGGACCCAACTCGAAGCTTTAGACTCTGTCATTACAGACCTCGAAACCTCCGC 248
Query 942 TCAAAAAGGTATCTCAATCACCGAACCAGAGATCTTCGCTTCTCTTCTCGAAACTTGCTA 1001
||||||||| |||||| | |||||||||||||||||||||||||||||||| || |||||
Sbjct 249 TCAAAAAGGCATCTCATTAACCGAACCAGAGATCTTCGCTTCTCTTCTCGAGACCTGCTA 308
Query 1002 CAGCTTAAGAGCTATTGACCATGGCGTTAGAGTTCATCACCTTATACCTCCCTACCTCTT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 309 CAGCTTAAGAGCTATTGACCATGGCGTTAGAGTTCATCACCTTATACCTCCCTATCTCTT 368
Query 1062 GCGCAATAACGTGGGAATTTCGTCGAAGCTGGTTAGGCTATATGCGTCTTGTGGCTACGC 1121
||| || ||| |||| ||||| |||||||| ||||| || || || ||||||||||||||
Sbjct 369 GCGGAACAACCTGGGGATTTCATCGAAGCTTGTTAGACTCTACGCCTCTTGTGGCTACGC 428
Query 1122 GGAGGTTGCACACGAGGTGTTCGATCGAATGTCTAAGAGAGAATCATCGCCTTTTGCTTG 1181
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 429 GGAAGTTGCACACGAAGTGTTCGATCGAATGTCTAAGAGAGACTCATCGCCTTTTGCTTG 488
Query 1182 GAACTCTCTTATCTCAGGTTACGCTGAATTGGGTCAGTACGAAGACGCCATGGCTCTCTA 1241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 489 GAACTCTCTTATCTCAGGCTACGCTGAATTGGGTCAGTACGAAGACGCCATGGCTCTTTA 548
Query 1242 CTTTCAGATGGCTGAAGACGGCGTGAAACCAGACCGCTTCAC-TTTCCCACGCGTTTTAA 1300
|||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||
Sbjct 549 CTTTCAGATGGCTGAAGACGGCGTGAAACCAGACCGGTTCACATTT-CCACGTGTTTTAA 607
Query 1301 AGGCTTGTGGAGGAATTGGGTCTGTTCAAATTGGAGAAGCAATTCACCGTGATTTGGTTA 1360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 608 AGGCTTGTGGAGGAATTGGGTCTGTTCAAATTGGAGAAGCGATTCACCGTGATTTGGTTA 667
Query 1361 AGGCAGGATTCGGATACGATGTAC-ATGTGCTCAATGCTCTTGTTGATATGTATGCGAAA 1419
||| ||| || ||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 668 AGGAAGGTTTTGGATACGATGT-CTATGTGCTCAATGCTCTTGTTGTTATGTATGCGAAA 726
Query 1420 TGCGGCGACATTGTTAAAGCAAGGAATGTTTTCGACATGATTCCTAACAAAGACTATGTT 1479
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 727 TGCGGCGACATTGTTAAAGCGAGGAATGTTTTTGACATGATTCCTCACAAAGACTATGTT 786
Query 1480 TCTTGGAACTCCATGTTGACTGGATACCTTCATCATGGCTTGTTACACGAGGCGTTGGAC 1539
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 787 TCTTGGAACTCCATGTTGACTGGTTACCTTCATCATGGCTTGTTACACGAGGCATTGGAC 846
Query 1540 ATTTTTCGTCAAATGGTTCAAAATGGGATTGATCCTGATAAGGTTGCTATCTCCAGTGTT 1599
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 847 ATTTTTCGTCTAATGGTTCAGAATGGGATTGAGCCTGATAAGGTTGCTATCTCCAGTGTT 906
Query 1600 CTAGCTCGTGTTTTGTCTTTCAAGCATGGACGACAGTTACATGGATGGGTAATTAGGCGA 1659
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 907 CTAGCTCGTGTTTTGTCTTTCAAGCATGGACGTCAGCTACATGGATGGGTAATTAGGCGA 966
Query 1660 GGAATGGAGTGGGAGTTATCGGTTGCGAATGCTTTGATTGTTCTATACTCCAAAAGGGGA 1719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GGCATGGAGTGGGAGTTATCGGTTGCGAATGCTTTGATTGTTCTATACTCCAAAAGGGGA 1026
Query 1720 CAATTGGGTCAAGCCTGCTTCAT-TTTCGATCAGATGCTCGAGAGAGATACCGTATCTTG 1778
|| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1027 CAGTTGGGTCAAGCCTGCTTCATATTT-GATCAGATGCTCGAGAGAGATACCGTATCTTG 1085
Query 1779 GAATGCTATCATCTCTGCTCATTCTAAAGATTCTAATGGTTTCAAGTATTTTGAGCAGAT 1838
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1086 GAATGCTATTATCTCTGCTCATTCTAAAAATTCTAATGGTTTAAAGTATTTTGAGCAGAT 1145
Query 1839 GCAACATGCTGATGCTAAACCTGATGGTATCACGTTTGTCTCTGTTCTATCTCTCTGTGC 1898
||| | |||| |||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 1146 GCACCGTGCTAATGCTAAACCAGATGGTATCACGTTTGTCTCGGTTTTATCTCTCTGTGC 1205
Query 1899 TAATACAGGAATGGTCGAAGATGGAGAGAGACTGTTCTCTTTGATGTCAAAGGAATACGG 1958
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1206 TAATACAGGAATGGTCGAAGATGGAGAGAGGTTGTTCTCTTTGATGTCAAAGGAATACGG 1265
Query 1959 GATAAACCCAAAGATGGAACACTATGCGTGCATGGTGAATCTCTACGGAAGAGCAGGGAT 2018
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1266 GATAGACCCGAAGATGGAACACTATGCGTGTATGGTGAATCTCTACGGAAGAGCAGGGAT 1325
Query 2019 GATGGAAGAGGCTTACTCAATGATTGTTCAAGAAATGGAGTTTGAGGCTGGTCCAACCGT 2078
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||
Sbjct 1326 GATGGAAGAGGCTTACTCAATGATTGTTCAAGAGATGGGGCTTGAGGCTGGTCCAACTGT 1385
Query 2079 TTGGGGAGCTTTGTTATACGCTTGTTACCTCCACGGAAATACAGATATAGGAGAGGTTTC 2138
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1386 TTGGGGAGCTCTGTTATACGCTTGTTACCTCCATGGAAATACAGATATAGGAGAGGTTGC 1445
Query 2139 TGCTCAACGTCTTTTCGAATTAGAACCTGATAACGAACATAATTTCGAGCTGTTGATGAG 2198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1446 TGCTCAACGTCTTTTCGAATTAGAACCTGATAACGAACACAATTTCGAGCTGTTGATAAG 1505
Query 2199 AATTTATAGCAAAGCAAAAAGAGCAGAGGATGTTGAGAGAGTAAGGCAGATGTTGGTGGA 2258
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1506 AATTTATAGCAAAGCAAAAAGAGCAGAGGATGTTGAGAGAGTAAGGCAGATGATGGTGGA 1565
Query 2259 TAGAGGATTGGAGACATAA 2277
|||||||||||||||||||
Sbjct 1566 TAGAGGATTGGAGACATAA 1584
> AT4G25280.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:12938956-12940744
REVERSE LENGTH=883
Length=883
Score = 1219 bits (660), Expect = 0.0
Identities = 722/753 (96%), Gaps = 0/753 (0%)
Strand=Plus/Plus
Query 10 CGCGTGGCTTTACTTTCTCCGATGATTTCTTCATCATCCCGATCCCTTATGCTTAACCAG 69
||||||||||||||||||||||||||||| |||||||| |||||||||| ||| | ||||
Sbjct 1 CGCGTGGCTTTACTTTCTCCGATGATTTCATCATCATCGCGATCCCTTAAGCTCAGCCAG 60
Query 70 GCAGCTTCTGGGCTCAAAGTTGGGGAATCTTTTGCAACAGACATAATTAAACCGGAAGAA 129
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 GCAGCTTCTGGGCTCAAAGTTGGGGAATCTTTTGCAACAGACATAATTAGTCAGGAAGAA 120
Query 130 CGAGTTTTACCGCCGAAAGAGAAAGCTCCATTTATTACATTTGTACTAGGAGGTCCTGGA 189
||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 CGAGTTTCACCGCCGAAAGAGAAAGCTCCATTTATTACATTTGTACTAGGGGGACCTGGA 180
Query 190 AGTGGAAAAGGTACACAATGCGAAAAAATTGTTGAGACTTTTGGATTGCAACATCTAAGT 249
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 181 AGTGGAAAAGGTACACAATGCGAAAAGATTGTTGAGACTTTTGGATTACAACATCTAAGT 240
Query 250 GCTGGAGATTTGCTCAGGAGAGAAATCGCAATGCACACGGAAAATGGGGCTATGATTTTG 309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 241 GCTGGAGATTTGCTCAGGAGAGAGATCGCAATGCACACGGAAAATGGGGCTATGATTCTG 300
Query 310 AACTTGATTAAAGATGGGAAGATTGTACCTTCAGAAGTTACAGTAAAGCTAATACAGAAA 369
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 301 AACTTGATTAAAGATGGGAAGATTGTTCCTTCAGAAGTTACAGTAAAATTAATACAGAAA 360
Query 370 GAGTTGGAATCGAGTGACAATCGCAAGTTTCTCATTGATGGATTTCCACGAACTGAGGAG 429
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GAGCTGGAATCGAGTGACAATCGCAAGTTTCTCATTGATGGTTTTCCACGAACTGAGGAG 420
Query 430 AACCGTGTTGCTTTTGAGCGCATAATAAGAGCAGACCCTGATGTAGTACTGTTCTTCGAT 489
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACCGTGTTGCATTTGAGCGCATAATAAGAGCAGACCCTGATGTAGTACTGTTCTTCGAT 480
Query 490 TGTCCTGAAGAAGAAATGGTGAAACGAGTCTTGAATCGTAATCAGGGCCGAATTGATGAT 549
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 TGCCCTGAAGAAGAGATGGTGAAACGCGTCTTGAATCGTAATCAGGGCCGAATTGATGAT 540
Query 550 AATATAACTACAATGAAGAAGCGTCTCAAAATCTTTAATGCCTTAAATCGTCCTGTTATT 609
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 541 AATATAACTACAATGAAAAAGCGTCTGAAAATCTTCAATGCCTTAAATCGTCCTGTTATT 600
Query 610 GACTACTACAAAAATAAAGGAAAACTCTACACTATTAACGCAGTAGGAACAGTAGATGAC 669
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 601 GACTACTACAAAAATAAAGGAAAACTCTACACCATTAATGCAGTAGGAACAGTAGACGAC 660
Query 670 ATATTCCAACATGTTCTACCTATTTTCAATTCATTTGAGCAATTGAAGGAGAGTAGTCAT 729
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATATTCCAACATGTCCTACCTATTTTCAATTCATTTGAGCAATTGAAGGAGAGTAGTCAT 720
Query 730 GTAAATCCACAGTCCCATCTCGGTTCGAGTTTG 762
|||||||||||||||||||||||||||||||||
Sbjct 721 GTAAATCCACAGTCCCATCTCGGTTCGAGTTTG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113001426795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5