BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354286

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62870.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   436    8e-122


> AT3G62870.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr3:23242665-23244353 REVERSE LENGTH=1048
Length=1048

 Score =  436 bits (236),  Expect = 8e-122
 Identities = 421/509 (83%), Gaps = 18/509 (4%)
 Strand=Plus/Plus

Query  79   AAGATTCTCCTCAAGTATAGGCCTGAGGACAAAGCAGCCAAGAAGGAGCGTCTTCTCAAG  138
            |||||||| || ||||||||||| ||||||||||| || |||||||| || ||| | || 
Sbjct  342  AAGATTCTTCTGAAGTATAGGCCAGAGGACAAAGCCGCAAAGAAGGAACGCCTTTTGAAC  401

Query  139  ACGGCTC-AGTCTGAGGCTGAGGGAAAACCTTCTGAGTCAAAGAAGCCCATTGTTGTCAA  197
            | ||||| || ||||||| || ||||| ||| |||| || ||||||||||||||||| ||
Sbjct  402  AAGGCTCAAG-CTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCATTGTTGTTAA  460

Query  198  GTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGAGA-AAGGCACAA-TTGGTGGTG  255
            |||||||||||||||||||||||||||||||||||||| | ||||||||  ||| |||| 
Sbjct  461  GTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGA-ACAAGGCACAGCTTG-TGGTC  518

Query  256  ATTGCTCATGATGTGGATCCGATTGAGTTGGTCGTCTGGCTGCCCACATTGTGCAGGATA  315
            ||||| || ||||| || || || |||||||| |||||| | ||  || | ||||||| |
Sbjct  519  ATTGCACACGATGTTGACCCTATCGAGTTGGTGGTCTGGTTACCTGCACTCTGCAGGAAA  578

Query  316  ATGGAAGTTCCTTACTGCATTGTCAAGGGGAAATCACGA-TTGGGAGTGATTGTCCACCA  374
            |||||||| |||||||||||||| ||||| ||||| ||  |||| || | | || |||||
Sbjct  579  ATGGAAGTCCCTTACTGCATTGTTAAGGGAAAATCTCGTCTTGG-AGCGGTCGTTCACCA  637

Query  375  GAAAA-TAGCAT-CTTGC-TTGTGTTTGACCACAGTGAAGAATGAGGATAAGCTGGAATT  431
            ||| | | || | || || ||||| |||||||| || ||||| ||||| ||||| || ||
Sbjct  638  GAAGACT-GC-TGCT-GCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGAGTT  694

Query  432  CAGCAAAATCCTAGAGGCCATAAAGGCAAACTTCAATGACAAGTAT-ATGGAGGAGC-GT  489
            |||||||||||| |||||||| ||||| |||||||| ||||||||  | |||| | | | 
Sbjct  695  CAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGA-GGAGTA-CAGG  752

Query  490  AAGAAGTGGGGAGGTGGGATTATGGGATCCAAATCGCAGGCCAAGACTAAGGCTAAGGAG  549
            ||||||||||||||||| || ||||||||||| || || |||||||| || |||||||||
Sbjct  753  AAGAAGTGGGGAGGTGGCATAATGGGATCCAAGTCTCAAGCCAAGACCAAAGCTAAGGAG  812

Query  550  AGGATTCTAGCCAAGGAGGCTGCTCAGAG  578
            ||| || | || ||||||||||| |||||
Sbjct  813  AGGGTTATTGCTAAGGAGGCTGCCCAGAG  841



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5