BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354330
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24430.1 | Symbols: | Rhamnogalacturonate lyase family prot... 3081 0.0
> AT4G24430.1 | Symbols: | Rhamnogalacturonate lyase family protein
| chr4:12630018-12633075 FORWARD LENGTH=2041
Length=2041
Score = 3081 bits (1668), Expect = 0.0
Identities = 1851/1940 (95%), Gaps = 9/1940 (0%)
Strand=Plus/Plus
Query 1 ATGTCGAACCAAGATTCTGTTCAGTTGGATGTCCAAGAAAGCCATGTAGTGATGGGAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGTCGAACCAAGATTCTGTTCAGTTGGATGTCCAAGAAAGCCATGTGGTCATGGGAAAT 60
Query 61 GGTATAGTGAAAGTGACCATATCAAAACCAGATGGTTTTGTCACCGAAATCTCTTACCAG 120
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 61 GGTAAAGTGAAAGTGACCATATCAAAACCAGATGGTTTTGTTACCGGAATCTCTTACCAG 120
Query 121 GGGGTTGACAATCTACTAGAAACTCACAATGAAGATTTCAATCGAGGGTATTGGGACCTT 180
|| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 GGCGTCGACAATCTACTAGAAACTCACAACGAAGATTTCAATCGAGGGTACTGGGACCTT 180
Query 181 GTTTGGAGCGATGAAGGGGCGCCTGGAACCACAGGGAAATCTGAGCGGATCAAAGGCACA 240
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTTTGGAGCGATGAAGGGACGCCTGGAACCACAGGGAAATCCGAGCGGATCAAAGGCACA 240
Query 241 AGTTTTGAAGTAGTAGTGGAAAATGAAGAACTGGTAGAGATTTCCTTCTCCAGGAAATGG 300
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 241 AGTTTTGAAGTAGTAGTGGAAAATGAAGAGCTGGTAGAAATTTCCTTCTCAAGGAAATGG 300
Query 301 GATTCTTCTCTCCAAGACAGTATTGCTCCCATTAATGTTGACAAGAGGTTCATAATGCGT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GATTCTTCTCTCCAAGACAGTATTGCTCCTATTAATGTTGACAAGAGGTTCATAATGCGT 360
Query 361 AAAAATGTAAGTGGATTCTACTCATATGCGATATTCGAGCATCTAGCGGAATGGCCTGCT 420
||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 361 AAAGATGTAACTGGATTCTACTCATATGCGATATTTGAGCATCTAGCGGAATGGCCAGCT 420
Query 421 TTTAACTTGCCTCAGACAAGGATTGTCTACAAGCTTCGTAAAGACAAGTTTCAATATATG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TTTAACTTGCCTCAGACAAGGATTGTCTACAAGCTTCGTAAAGACAAGTTTAAATATATG 480
Query 481 GCGATTGCTGATAACAGACAGAGGAAAATGCCACTTCCAGAAGATAGATTGGGTAAAAGA 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 GCGATTGCTGATAACAGGCAGAGGAAAATGCCACTTCCAGAGGATAGATTGGGGAAAAGA 540
Query 541 GGAAGACCCTTGGCTTATCCTGAAGCTGTTCTTCTTGTTCATCCTGTTGAAGAAGAGTTT 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGAAGACCTTTGGCTTATCCTGAAGCTGTTCTTCTTGTTCATCCTGTTGAAGACGAGTTT 600
Query 601 AAAGGAGAGGTTGATGACAAGTATGAGTATTCATGCGAGAACAAAGACCTCAAAGTGCAT 660
||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||
Sbjct 601 AAAGGAGAGGTTGATGACAAGTATGAGTATTCAAGTGAGAACAAAGATCTGAAAGTGCAT 660
Query 661 GGATGGATCTCACATAACCTGGATTTGGGTTGCTGGCAAATCATTCCTAGCAATGAGTTC 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGATGGATCTCACATAACTTGGATTTGGGTTGCTGGCAAATCATTCCTAGCAATGAGTTC 720
Query 721 AGATCAGGTGGCTTGTCGAAACAGAACCTTACCTCTCATGTTGGTCCCATCAGTCTCGCC 780
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 721 AGATCAGGTGGCTTGTCCAAACAGAACCTTACTTCTCATGTTGGTCCCATCAGTCTTGCT 780
Query 781 ATGTTTTTGAGTGCTCACTACGCGGGTGAGGACATGGTGATGAAGGTGAAAGCAGGGGAG 840
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 ATGTTTTTGAGTGCTCACTACGCGGGTGAGGATATGGTGATGAAGGTGAAAGCAGGGGAC 840
Query 841 TCATGGAAGAAAGTGTTTGGTCCTGTTTTTACTTACCTCAATTGCTTGCCTGACAAAACC 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 TCATGGAAGAAAGTGTTTGGTCCTGTCTTTACTTACCTCAATTGCTTGCCTGACAAAACC 900
Query 901 TCTGATCCTCTTTTGCTGTGGGAAGACGCGAAAAACCAGATGTTAACTGAAGTCCAAAGC 960
||||| ||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 901 TCTGACCCTCTTTCGCTATGGCAAGACGCTAAAAACCAGATGTTAACTGAAGTCCAAAGC 960
Query 961 TGGCCTTACGATTTCCCTGCTTCAGAAGACTTTGCAGTGTCCGATAAGCGCGGTTGCATC 1020
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 961 TGGCCTTACGATTTCCCTGCTTCAGAAGACTTTCCAGTGTCCGATAAGCGCGGTTGCATC 1020
Query 1021 AGCGGTAGATTACTAGTATGCGACAA-TG----A-TGA--ACTTTT-ACCGGCCAATGGT 1071
|||||||||||||||||||||||||| | | ||| | |||| ||| || ||||||
Sbjct 1021 AGCGGTAGATTACTAGTATGCGACAAATTTCTTAGTGATGATTTTTTACCAGCAAATGGT 1080
Query 1072 GCTTTCGTAGGTTTGGCTCCACCAGGAGAGGTTGGATCCTGGCAATTAGAATCTAAGGGC 1131
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTTTCGTAGGGTTGGCTCCACCAGGAGAGGTTGGATCCTGGCAATTAGAATCTAAGGGA 1140
Query 1132 TATCAATTCTGGACAGAAGCAGATGCTGATGGTTATTTCGCCATAAATGATATCCGAGAA 1191
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1141 TATCAATTCTGGACAGAAGCAGATTCTGATGGTTATTTCGCGATAAATGATATCCGAGAA 1200
Query 1192 GGCGAATATAATCTCAATGCTTATGTGACAGGATGGATTGGAGACTATCAATACGAACAA 1251
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 GGCGAGTATAATCTCAATGGTTATGTGACAGGATGGATAGGAGACTATCAATACGAACAA 1260
Query 1252 TTGATTAACATTACTGCAGGCTGCGACATTGACGTTGGCAATATCGCGTATGAACCGCCC 1311
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 TTGATTAACATTACTGCAGGCTGCGACATTGACGTTGGCAATATCGTGTATGAACCGCCC 1320
Query 1312 CGAGATGGGCCAACGGTGTGGGAAATAGGGATACCTGACCGGTCTGCAGCTGAGTTCTTT 1371
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CGAGATGGGCCAACAGTGTGGGAAATAGGGATACCTGACCGGTCTGCAGCTGAGTTCTTT 1380
Query 1372 GTTCCAGACCCAAATCCCAAATACATCAACAAACTATACATTGGTCATCCTGATAGGTTT 1431
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 GTTCCAGACCCAAATCCCAAATACATCAACAAACTATATATTGGTCATCCTGATAGGTTT 1440
Query 1432 AGGCAATACGGGCTTTGGGAAAGATACACAGAACTATATCCTAAGGAAGATTTGGTGTTC 1491
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGGCAATACGGGCTATGGGAAAGATACACAGAACTATATCCTAAGGAAGATTTGGTGTTC 1500
Query 1492 ACCATAGGCGTCAGTGATTACAAAAAAGATTGGTTCTTTGCACACGTTACCAGGAAATTG 1551
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1501 ACCATTGGCGTCAGTGATTACAAAAAAGATTGGTTCTTTGCACACGTTACCAGGAAAATG 1560
Query 1552 GGAGATGACACATATCAAAAAACGACATGGCAAATCACGTTCAAGCTAGAGAATGTGCAG 1611
|||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 1561 GGAGATGATACATATCAGAAAACAACATGGCAAATCAAGTTCAAGCTAGAGAATGTACAG 1620
Query 1612 AAAAACAGCACATACAAAATCCGGATCGCACTAGCAACAGCAAATGTAGCAGAATTACAG 1671
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1621 AAAAGTTGCACATACAAAATCCGGATCGCGCTAGCAACTGCAAATGTAGCAGAATTACAG 1680
Query 1672 GTGAGGATGAATGATGATGACACTGAAAAGAGTACTCCTCTGTTCACAACGGGTGTAATC 1731
||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||
Sbjct 1681 GTGAGGATGAATGATGATGACACAGAAAAGACTACTCCTATATTCACAACGGGTGTAATC 1740
Query 1732 GGGCACGATAACGCGATTGCAAGACATGGAATACATGGAATCTATAGGCTTTATAATGTG 1791
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1741 GGGCACGATAACGCGATTGCAAGACATGGGATACATGGAATCTATAGGCTTTATAATGTG 1800
Query 1792 GATGTACCAAGTGAGAAGCTTGTAGAAGGAGAAAACACTTTGTTCTTGACACAAACCATG 1851
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1801 GATGTACCAAGTGAGAAGCTTGTGGAAGGAGACAACACTTTGTTCTTGACACAAACCATG 1860
Query 1852 ACCACCACTGGAGCCTTTAATGGTCTCATGTACGACTATATCCGCCTTGAAGGACCTCCT 1911
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1861 ACCACCACTGGAGCCTTTAATGGTCTCATGTATGACTATATCCGCCTCGAAGGACCTCCT 1920
Query 1912 TTAGATTCAAACTCTCACTA 1931
||||||||| ||||||||||
Sbjct 1921 TTAGATTCATACTCTCACTA 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95682238770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5