BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354336
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24340.1 | Symbols: | Phosphorylase superfamily protein | c... 935 0.0
AT4G24350.1 | Symbols: | Phosphorylase superfamily protein | c... 773 0.0
> AT4G24340.1 | Symbols: | Phosphorylase superfamily protein |
chr4:12607447-12609252 FORWARD LENGTH=1149
Length=1149
Score = 935 bits (506), Expect = 0.0
Identities = 619/672 (92%), Gaps = 14/672 (2%)
Strand=Plus/Plus
Query 32 GGACCAAAATCATTTTCTTCTTCCTCTCCTCTTCATCATTATCATCTCTTCCCTGCACGT 91
||| || |||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 40 GGATCACAATCATTTTCTTTTTCCTCTCCTCTTCATCATCATCATCTCTTCCTTGCACGT 99
Query 92 TTTGCTTGCTTCCA-C-CACC--C-C-TTCACAC-AACT-AAATCTGCCATTACCATCAG 143
||||| |||||| | | |||| | | |||||| |||| ||||| |||| |||||| ||
Sbjct 100 TTTGCGTGCTTCGACCACACCTTCACACTCACACAAACTAAAATCCGCCACTACCATTAG 159
Query 144 AAAACTCAACCGTAGAGGACCTTACATTGGTCTCGTGACAGTCTTTGAGACCGAAGAAAA 203
|||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
Sbjct 160 AAAAATCAACCGTAGAGGACCTTACATTGGCCTTGTGACGGTCTTTGAGACCGAAGAAGA 219
Query 204 TGCTTTTCTCGGCAGTGTTGATTTCAGACCCGATCCTATGCATCCTTTCCTCGATCTCTC 263
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 220 TGCTTTTCTCGGCAGTGTTGATTTCAGACTCGATCCTACGCATCCTTTCCTCGATCTCTC 279
Query 264 TGGAAGACGTTTTCGTTTTCGGATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAG 323
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 280 TGGAAGACGTTTTCG---T---ATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAG 333
Query 324 ATGTGGGATAGGAATGGTGAATGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAA 383
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 334 ATGTGGGATAGGAATGGTGAACGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAG 393
Query 384 CGTGAAAGGGATTGTGCATTTTGGAATTTCTGGAAATATAAACAACTCAATGTCCATAGG 443
||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 394 TGTGAAAGGGATTGTGCATTTTGGGATTGCTGGAAATATAAACAACTCGATGTCCATAGG 453
Query 444 AGATGTGAGCATTCCTAAGCAAATCACGAATGCTGGCTTATGGGATTGGCTGAATCCAGA 503
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 454 AGATGTGAGCATCCCTAAGCAAATCACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGG 513
Query 504 AAAAGCAAAAGGAAGTGAGGATGTAGCCTACTTAGATGTCGGGAACTATAATGTTCCACA 563
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 514 CAAAGCAAAAGGAAATGAGGATGTAGCGTACTTAGATGTCGGGAACTATAATGTTCCACA 573
Query 564 AGGCAAGAATGAGTTAGGGACTATTGGATATAGTTACGAGGAATTATATTCAGTCAATGG 623
||| || ||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 574 AGGAAACAATAAGTTAGGAACTATTGGATACAGTTACGAGGAATTATATTCAGTCAGTGG 633
Query 624 TCACATCAATTCACCACAGAAAGTGTTTTGGATCAATACAACTCAAGAGTGGCTTCATCT 683
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 634 TCACATCAATTCACCAAAGAAAGTGTTTTGGATTAATACAACTCAAGAGTGGCTTCATCT 693
Query 684 CGCAGCTGATCT 695
|||||||||||
Sbjct 694 TGCAGCTGATCT 705
> AT4G24350.1 | Symbols: | Phosphorylase superfamily protein |
chr4:12609528-12611468 FORWARD LENGTH=1260
Length=1260
Score = 773 bits (418), Expect = 0.0
Identities = 597/680 (88%), Gaps = 26/680 (4%)
Strand=Plus/Plus
Query 32 GGACCAAAATCATTT-TCTTCTTCC-TCTCCTCTTCATCATTATCATCTCTTCCCTGCAC 89
|||||| | || ||| ||||||||| | | ||||||||||| ||||| |||||| | ||
Sbjct 112 GGACCACACTC-TTTCTCTTCTTCCAT-TTCTCTTCATCATAATCATTTCTTCCTTCCAT 169
Query 90 GTTTTGCTTGCTTCCA-CCACCCCTTCACAC-AACT-AAATCTGCCATTACCATCAGAAA 146
||||||| || || || |||| ||||||||| |||| ||||| |||| ||||||||||||
Sbjct 170 GTTTTGCCTG-TTTCACCCACACCTTCACACAAACTAAAATCCGCCACTACCATCAGAAA 228
Query 147 ACTCAACCGTAGAGGACCTTACATTGGTCTCGTGACAGTCTTTGAGACCGAAGAAAATGC 206
||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||||
Sbjct 229 ACTCAACCGCGGAGGACCTTACATCGGTCTCGTGACGGTCATTGCGACCGAAGAAAATGC 288
Query 207 TTTTCTCGGCAGTGTTGATTTCAGACCCGATCCTA-TGCATCCTTTCCTCGATCTCTCTG 265
||||||| ||||||| ||||||||||| || |||| | ||||| ||| | ||||||||||
Sbjct 289 TTTTCTCCGCAGTGTCGATTTCAGACCTGACCCTACT-CATCCCTTCTTGGATCTCTCTG 347
Query 266 GAAGACGTTTTCGTTTTCGGATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAGAT 325
| || | |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 348 G--GA-G---ACGTTTTCGAATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTTAGAT 401
Query 326 GTGGGATAGGAATGGTGAATGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAACG 385
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 402 GTGGGAGAGGAATGGTGAATGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATG 461
Query 386 TGAAAGGGATTGTGCATTTTGGAATTTCTGGAAATATAAACAACTCAATGTCCATAGGAG 445
|||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 462 TGAAAGGGATAGTGCATTTTGGGATTGCTGGAAATATGAACAACTCAATGTCCATAGGAG 521
Query 446 ATGTGAGCATTCCTAAGCAAATCACGAATGCTGGCTTATGGGATTGGCTGAATCCAGAAA 505
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 522 ATGTGAGCATCCCTAAGCAAATTACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGACA 581
Query 506 AAGCAAAAGGAAGT-GAGGATGTAGCCTACTTAGATGTCGGGAACTATAATGTTCCACAA 564
||| ||| ||| || |||||| |||| |||||||||||||| ||||||||||||||| ||
Sbjct 582 AAGTAAAGGGA-GTTGAGGATATAGCGTACTTAGATGTCGGAAACTATAATGTTCCAAAA 640
Query 565 GGCA-A-G---A-A-TGAGTTAGGGACTATTGGATATAGTTACGAGGAATTATATTCAGT 617
|| | | | | | ||||||||||| ||||||||||| ||||||| || ||||||||||
Sbjct 641 GG-AGATGGCGACAATGAGTTAGGGAGTATTGGATATAATTACGAGCAACTATATTCAGT 699
Query 618 CAATGGTCACATCAATTCACCACAGAAAGTGTTTTGGATCAATACAACTCAAGAGTGGCT 677
|| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 700 CACTGGTCACATCAATGCACCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCT 759
Query 678 TCATCTCGCAGCTGATCTAG 697
|||||| |||||||||||||
Sbjct 760 TCATCTTGCAGCTGATCTAG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5