BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354358
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor ... 1301 0.0
> AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor
8 | chr4:12535972-12539387 FORWARD LENGTH=1482
Length=1482
Score = 1301 bits (704), Expect = 0.0
Identities = 786/827 (95%), Gaps = 0/827 (0%)
Strand=Plus/Plus
Query 469 GTAACAGTGGCAGTGGCAAAAGGAGGCTCATTGCAGCTTGGGATTGCTTCAAGCGCAAGC 528
||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 655 GTAACTGTGGCAGTGGCGACAGGAGGCTCATTGCAGCTGGGGATTGCTTCAAGCGCAAGC 714
Query 529 AACAACTCGGCTGATCTGGAGCCATGGAGGTGCAAGAGAACAGATGGGAAGAAATGGAGA 588
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AATAACACGGCTGATCTGGAGCCATGGAGGTGCAAGAGAACAGATGGGAAGAAATGGAGG 774
Query 589 TGCTCTAGAAACGTGATTCCTGATCAGAAATACTGTGAGAGGCACACACACAAGAGCCGT 648
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 775 TGCTCTAGAAACGTGATTCCTGATCAGAAATACTGTGAGAGACACACACACAAGAGCCGT 834
Query 649 CCTCGTTCAAGAAAGCATGTGGAATCATCTCACCAATCGTCTCACCACAATGACATTCCT 708
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 835 CCTCGTTCAAGAAAGCATGTGGAATCATCTCACCAATCATCTCACCACAATGACATTCGT 894
Query 709 ACCACTAAGAACGATACTAGCCAGTTTGCGAGAACTTATCCTCAGTTTTACGGACAACCT 768
|| ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 895 ACGGCTAAGAATGATACTAGCCAGCTTGTGAGAACTTATCCTCAGTTTTACGGACAACCT 954
Query 769 GTAAGCCAGATCCCTGTGCTTTCTACTCTTCCGTCTGCTTCCTCTTCATATGATCACCAC 828
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 955 ATAAGCCAGATCCCTGTGCTTTCTACTCTTCCGTCTGCCTCCTCTCCATATGATCACCAC 1014
Query 829 AGAGGATTGAGGTGGTTTAGGAAAGAAGATGATGCCATTGGAACTTTAAACCCGGAGATT 888
|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 1015 AGAGGACTGAGGTGGTTTACGAAAGAAGATGATGCCATTGGAACCTTAAACCCGGAGACT 1074
Query 889 CAAGACGCTGTCCAGCTGAAGGTTGGATCAAACAGAGAGCTCAAACGCGGATTCGATTAT 948
||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 1075 CAAGAAGCTGTCCAGCTGAAAGTTGGATCAAGCAGAGAGCTCAAACGGGGATTCGATTAT 1134
Query 949 GATCTAAATTTCAGGCAGAAGGAGCCAGTAGTAGACCAGAGCTTTGGAACATTGCAGGGT 1008
||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1135 GATCTGAATTTCAGGCAGAAAGAGCCAATAGTAGACCAGAGCTTTGGAGCATTGCAGGGT 1194
Query 1009 CTATTGAGTCTAAACGAGACACCACAACATAACCAAGAGACAAGGCGGTTTGTTGTAGAA 1068
||||| ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1195 CTATTAAGTCTAAACCAGACACCACAACATAACCAAGAAACAAGACAGTTTGTTGTAGAA 1254
Query 1069 GGGAAGCAAGACGAAGCAATGGGAAGCTCTCTGACACTATCAATGGCTGGAGGAGGCATG 1128
|| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 GGAAAGCAAGATGAAGCGATGGGAAGCTCTCTGACACTCTCAATGGCTGGAGGAGGCATG 1314
Query 1129 GAGGAAGCAGAGGGAACCAACCAGCATCAGTGGGTTAGCCATGAAGGTCCATCATGGCTC 1188
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAGGAAACAGAGGGAACAAACCAGCATCAGTGGGTTAGCCATGAAGGTCCATCATGGCTC 1374
Query 1189 TATTCAACAACACCAGGTGGACCATTGGCTGAAGCACTGTGTCTCGGTGTCTCCAACAAC 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TATTCAACAACACCAGGTGGACCATTGGCTGAAGCACTGTGTCTCGGTGTCTCCAACAAC 1434
Query 1249 CCAAGTTCTAGTACTACTACTAGTAGCTGCAGCAGAAGCTCAAGCTA 1295
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CCAAGTTCTAGTACTACTACTAGTAGCTGCAGCAGAAGCTCAAGCTA 1481
Score = 667 bits (361), Expect = 0.0
Identities = 425/456 (93%), Gaps = 3/456 (1%)
Strand=Plus/Plus
Query 15 AGAACGTAAGGAAGATTTTGTTGGTGGGTTTGGATTTGGAGTTGTAGAAAATTCGCATAA 74
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 AGAACGCAAGGAAGATTTTGTTGGTGGGTTTGGATTTGGTGTTGTAGAAAATTCGCATAA 188
Query 75 AGACGTTATGGTGCTACCACATCATCATTATCATCCATCATATTCATCACCTTCCTCTTA 134
|||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 189 AGACGTTATGGTGCTACCTCATCATCACTATTATCCATCATATTCATCACCTTCCTC--- 245
Query 135 TTCTTCTTTGTGCTACTGTTCTGCTGGTGTTAGCGATCCCATGTTCTCTGTTTCTAGCAA 194
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TTCTTCTTTGTGTTACTGTTCTGCTGGTGTTAGCGATCCCATGTTCTCTGTTTCTAGCAA 305
Query 195 TCAGGCATACACTTCTTCTTACAGTAATATGTTTTCTCACACCGGTTCTGGTTCTACTGC 254
|||||| |||||||||||| ||||| |||||| | | | |||||||||||||| ||||
Sbjct 306 TCAGGCTTACACTTCTTCTCACAGTGGTATGTTCACACCCGCCGGTTCTGGTTCTGCTGC 365
Query 255 TGTGACTGTAGCAGATCCTTTTTTCTCCTTGAGCTCTTCAGGGGAAATGAGAAGAAGTAT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGTGACTGTAGCAGATCCTTTTTTCTCCTTGAGCTCTTCAGGGGAAATGAGAAGAAGTAT 425
Query 315 GAATGAAGACGCAGGTGCAGCTTTCAGTGAAGCTCAATGGCAGGAGCTTGAGAGGCAGAG 374
||| ||||| || |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 426 GAACGAAGATGCTGGTGCAGCTTTCAGCGAAGCTCAATGGCATGAGCTTGAGAGGCAGAG 485
Query 375 GAATATATATAAATACATGATGGCTTCTCTTCCTGTTCCTCCCGAGCTTCTCACTCCCTT 434
||||||||| || ||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 486 GAATATATACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCAGAGCTTCTCACACCCTT 545
Query 435 TCCCAAGAACCACCCATCAAACACTGACCCGGATGT 470
|||||||||||||| |||||||||| ||||||||||
Sbjct 546 TCCCAAGAACCACCAATCAAACACTAACCCGGATGT 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5