BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354376
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23950.2 | Symbols: | Galactose-binding protein | chr4:1244... 2213 0.0
> AT4G23950.2 | Symbols: | Galactose-binding protein | chr4:12442047-12444547
FORWARD LENGTH=2156
Length=2156
Score = 2213 bits (1198), Expect = 0.0
Identities = 1396/1491 (94%), Gaps = 16/1491 (1%)
Strand=Plus/Plus
Query 249 AGATAGAATTGGGAATTACACTGATGGATCAGTCTCAAAAACCCTGAATACCACGAGTTC 308
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 460 AGATAGAATTGGGAATTACACTGATGGATCAGTCTCAAAGACACTGAATTCCACGAGTTC 519
Query 309 TGTCTTCCCTCAGGCCTCTGGGAAAGAAAACAACTATTGTCTTCTGAGAAACGGTCAGTT 368
|||||||||||||||| ||| |||||||||||||| |||||| |||||||| || |||||
Sbjct 520 TGTCTTCCCTCAGGCCACTGAGAAAGAAAACAACTTTTGTCTCCTGAGAAAAGGCCAGTT 579
Query 369 ACAAGATGTGTATGAGCATGTTCTTGGGAACAACGCTTTGTTGATTTGCAAAATTGTGCT 428
|||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
Sbjct 580 ACAAGATGTGTATGAGCATGTTCTTGTGAACAACGCTTTGTTGATCTGCAAAGTTGTGTT 639
Query 429 GCCAGAACGAAGAATAAGCAAGAAGACCCTGGAAGCTCGTGATCCCATATATGTCAATCT 488
|||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||
Sbjct 640 GCCAGAACGAAGAATAAGCAAGAAAACTCTGGAAGCTCGTGATCCTAGATATGTCAATCT 699
Query 489 TGAAGATAAAAGTCTCAAAGTAAATGGCTCGGGCTTGCCATCACAGCTTGTGAATAATGT 548
|||||| || ||||||||||| || | ||| | |||||||||||||||||||||
Sbjct 700 TGAAGACAAGAGTCTCAAAGTTAA----T--GGC-T--CATCACAGCTTGTGAATAATGG 750
Query 549 GACTCATTATAGGGTAGAACCAGATGGAACTGGGTATAACTACGCTTCTGTTATGAAAGG 608
||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 751 GACTCGTTATAGGTTAGAACCAGATGGAAATGGGTATAACTACGCTTCTGCTATGAAGGG 810
Query 609 CGCGAAAGTTGTGGATCACAACAAGGAAGCAAAAGGAGCTAGCAATGTGCTTGGCAAAGA 668
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TGCTAAAGTTGTGGATCACAACAAGGAAGCAAAAGGAGCTAGCAATGTGCTTGGCAAAGA 870
Query 669 TCATGATAAGTATCTAAGAAACCCCTGTTCAGTGTCAGATAAGTATGTTGTGATTGAACT 728
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 871 TCATGATAAGTATCTAAGAAATCCCTGTTCAGTGTCAGATAAGTATGTTGTGATTGAGCT 930
Query 729 CGCGGAGGAGACCCTGGTTGATACTGTGAGAATTGCGAATTTGGAGCACTACTCTTCGAA 788
||| |||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 931 CGCCGAGGAGACACTGGTTGATACGGTGAGAATTGCAAATTTTGAGCATTACTCTTCGAA 990
Query 789 TCCCAAAGAGTTTAA-TATGTCAGGGAGTCTGAGTTACCCAACCGATATGTGGACACCTG 847
|||||||||||||| | |||||||||||||||||| ||| | ||||||||||||||||
Sbjct 991 TCCCAAAGAGTTTAGCT-TGTCAGGGAGTCTGAGTTTCCCTAGTGATATGTGGACACCTG 1049
Query 848 CTGGGAGTTTCGTGGCTGCAAACGTTAAGCAGATCCAGACATTCCGGCTCCCGGAACCTA 907
|||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1050 CTGGGAGTTTTGCGGCTGCAAACGTTAAGCAGATCCAGTCATTCCGGCTCCCGGAACCTA 1109
Query 908 AATGGTTGAGATATCTTAAACTTAATTTAGTTAGTCACTACGGGTCTGAGTTTTACTGTA 967
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1110 AATGGTTGAGATATCTGAAACTTAATTTAGTTAGTCACTATGGGTCTGAGTTTTACTGTA 1169
Query 968 CTCTGAGTGTTGTGGAGGTCTTTGGAATTGATGCTCTTGAGCAAATGCTTGAAGATCTGT 1027
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1170 CTCTGAGTGTTGTGGAGGTATTTGGCATTGATGCTCTTGAGCAAATGCTTGAAGATCTGT 1229
Query 1028 TTGTTCCATCAGAGACTCTTCCCAGTAAACCAGCTATGCTGGAACTAAAAACCGCAGATG 1087
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1230 TTGTTCCATCAGAGACTCCTCCCAGTAAACCAGCTATGGTGGAACTAAAAACTGCAGATG 1289
Query 1088 AAAAAGAAGTTGGGGAAGTGAAAAGCAATAGGACAGATCAGATTGGCAAGGAAACTGAAG 1147
||||| ||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1290 AAAAACAAGATGGGGAAATAAAAAGCAATAGGACAGATCAGATTGGCAAAGAAACTGAAG 1349
Query 1148 CTCAGAAGAAGAAAGATGATGTTGTGAAGACGATTAACATCATAGGAGACAAAAAATATG 1207
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1350 CTCAGAAGAAGAAAGATGATGTTGTGAAGACGATTAATATCATAGGAGACAAAAAGTATG 1409
Query 1208 AAGTCAGGGAGAAGCATAACGTTTTGAAAGTGATGATGCAGAAAGTGAAATTGATTGAGA 1267
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 AAGTCAAGGAGAAGCATAACGTTTTGAAAGTGATGATGCAGAAAGTGAAATTGATTGAGA 1469
Query 1268 TGAATTTATCGCTTCTTGAGGACTCTGTGAAGGAAATGAATGAGAAGCAACCAGAAGTTA 1327
|||||||||||||||||||||| ||||| ||| |||||||||| || |||||||| ||||
Sbjct 1470 TGAATTTATCGCTTCTTGAGGATTCTGTAAAGAAAATGAATGACAAACAACCAGAGGTTA 1529
Query 1328 GCTTGGAGATGAAGAAAACCCTAATACTTGTGGAGAAAAGCAAAGCTGACATCAGAGAGA 1387
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1530 GCTTGGAGATGAAGAAAACCCTAGTACTTGTGGAGAAAAGCAAAGCTGACATCAGAGAGA 1589
Query 1388 TCACAGAATGGAAAGGGAAAATG--G-AAAAGGAACTTAGAGACCTAGAGCTATGGAAAA 1444
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1590 TCACAGAATGGAAAGGGAAAATGCAGGAAAAGGAACTTAGAGACCTAGAGCTATGGAAAA 1649
Query 1445 CTCTTGTAGCTTCCCGTGTAGAATCATTGGCCAGAGGAAACACTGCATTGAGATTGGATG 1504
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1650 CTCTTGTAGCTTCCCGTGTAGAATCATTGGCTAGAGGAAACTCTGCATTGAGATTGGATG 1709
Query 1505 TAGAGAAGATTGTGAAAGAGCAAGCAAATCTAGAGAGCAAAGAGCTGGGAGTTCTACTAA 1564
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |
Sbjct 1710 TAGAGAAGATTGTGAAAGAACAAGCTAATCTAGAGAGTAAAGAGCTGGGAGTTCTATTGA 1769
Query 1565 TAAGCCTCTTTTTCGTGGTCTTAGCAACGATTCGGTTAGTCTCAACACGACTCTGGACGT 1624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1770 TAAGCCTCTTTTTCGTGGTCTTAGCAACGATTCGGTTAGTCTCAACACGACTCTGGGCAT 1829
Query 1625 TTATGGGGATGTCTTTTACGGATAAAGCTCGATCACTATGGCCGGATAGTGGCTGGGTCA 1684
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 TTCTGGGGATGTCTATTACGGATAAAGCTCGATCACTATGGCCGGATAGTGGCTGGGTCA 1889
Query 1685 TGATACTTCTAAGCAGCAGCATCATGATTTTCATT-ACTCTACTCTCTTAG 1734
||||||| ||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1890 TGATACTGCTAAGCAGCAGCATCATGATTTTCATTCATT-TACTCTCTTAG 1939
Score = 333 bits (180), Expect = 3e-90
Identities = 205/216 (95%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 1 ATGACGAGGCGCGGAATG-TGTTCGACGATATGCCTGAATGAAAAATTGCAAAGGTTCCG 59
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 251 ATGGCGAGGCGCGGAA-GCTGTTCGACGATATGCCTGAATGAAAAATTGCAAAGGTTTCG 309
Query 60 AATTGTCAGAATCTCCGAAAAGGCTGATAATTTTAATTCAAGAAGCGGCAGCTTCTTCGA 119
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 310 AATTGTCAGAATCTCCGACAAGGCTGATAATTTTAATTCCAGAAGCGGCAGCTTCTTCGA 369
Query 120 GCGTTCTATCTCTCTCGTTCTCTTACTCTGGTGCTTCCTTTTCCTCGTCTACTCCAAGCT 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 370 GCGTTCTATCTCTCTCGTTCTCTTACTCTGGTGCTTCCTCTTCCTCGTCTACTCCAAGCT 429
Query 180 TGGCCAAAGCCATGATTATGATTATGGTAATGGAGA 215
|||||||||||||||| ||||||||||||| |||
Sbjct 430 TGGCCAAAGCCATGAT---GATTATGGTAATGCAGA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5