BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354394

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23780.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   512    1e-144


> AT4G23780.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G23770.1); 
Has 51 Blast hits to 49 proteins in 22 species: Archae - 0; 
Bacteria - 9; Metazoa - 12; Fungi - 0; Plants - 14; Viruses 
- 2; Other Eukaryotes - 14 (source: NCBI BLink). | chr4:12386353-12386799 
REVERSE LENGTH=447
Length=447

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 376/422 (89%), Gaps = 14/422 (3%)
 Strand=Plus/Plus

Query  1    ATGTCTAGTCTTGGGGACCAATC-G-G-AG-A-A-CAACAACAAAATTTCCGATAATGTT  54
            ||||||||||||||| ||||||| | | || | | ||| |||||| ||||||||||||||
Sbjct  1    ATGTCTAGTCTTGGGAACCAATCGGAGAAGAACAGCAATAACAAATTTTCCGATAATGTT  60

Query  55   CC-CTTAGCTCAACACGAGATTTTGAAAGGGAAATATGAGAGTTTGGTGACAGAGCACGA  113
            || | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  61   CCAC-TAGCTCAACACGAGATTTGGAAAGAGAAATATGAGAGTTTGGTGACAGAGCACGA  119

Query  114  GAATCTGGTGAAAGAACATGAAACCCTAATCAAAACACTCGAGCTTATAGAGAAAACGCA  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct  120  GAATCTGGTGAAAGAACATGAAACCCTAATCAAAACACTCGAGCTTATAGAGAA---GCA  176

Query  174  CCAAATCACAGTAGAGGATCTAGTGAAGAAGAAGGAGAGAGAATCATTGGTTGGGAAGGA  233
            | |||||||| |||||||| |||||||||||||| || ||||| ||||||||||||| ||
Sbjct  177  CGAAATCACATTAGAGGATTTAGTGAAGAAGAAGCAGCGAGAAGCATTGGTTGGGAAAGA  236

Query  234  AGAGATTGAAAAGTTTGACAACGAGATTGCTGAAATAAAGAAGATGCAAGAGATGCTTGA  293
            ||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||
Sbjct  237  AGAGATTGAAAAGTTTGACAAGGAGATTGGTGAAAGGAAGAAGATGCAAGAGATGCTTGA  296

Query  294  TAAGGATATCGAATACTTAAAGTCTCGTGGAGAAACCGAGGTGAACGGTATGAGTTCAGG  353
            ||||||| | ||||||||||||||| ||| |||||| | | |||| ||||||||||||||
Sbjct  297  TAAGGATCTTGAATACTTAAAGTCTTGTGAAGAAACTGTGATGAATGGTATGAGTTCAGG  356

Query  354  ACCAAGCAGTGCAAGAGATGCAGAGAAGAAACGTAATCTGAGCAAGTTTGCATCAAAAGA  413
            ||||||  ||||||||| |||||| || |  |||||| ||| |||||||| |||| ||||
Sbjct  357  ACCAAGTGGTGCAAGAGTTGCAGACAA-A--CGTAATGTGAACAAGTTTGAATCACAAGA  413

Query  414  GG  415
            ||
Sbjct  414  GG  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5