BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354468
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22960.1 | Symbols: | Protein of unknown function (DUF544) ... 739 0.0
> AT4G22960.1 | Symbols: | Protein of unknown function (DUF544)
| chr4:12030020-12033137 FORWARD LENGTH=1708
Length=1708
Score = 739 bits (400), Expect = 0.0
Identities = 695/825 (84%), Gaps = 69/825 (8%)
Strand=Plus/Plus
Query 9 CGAT-GATTACTCTCGTCCTCCTCCGGACAAAATCTTTTACAAGACGAAGAAGATTAAGT 67
|||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 106 CGATCGATAACTCTCGTCCTCCTCCGGACGAAATCTTTTACAAGACGAAGAAGATTTTGT 165
Query 68 ATCGTGGACAAACGAGGAATATCATTCTCCAGGACGATAATGGACCATGTCCTCTCATCG 127
|||||||||||| | | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 166 ATCGTGGACAAAGGTGCAATATCATTCTCCAGGATAAGAATGGACCATGTCCTCTCATCG 225
Query 128 CCATTTGTAACGTTCTTATCTTGAAACACGGAATTGATCTAGACACTCACAATTCTCAAG 187
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 226 CCATTTGTAATGTTCTTATCTTGAAACACGGAATTAATCTAGACACTTACAATTCTCAAG 285
Query 188 TATCTGAAGAGAAGTTGCTGAATCTTGTTG-GCGA-GATACTTTCTGATGA-AGACGAGT 244
||||||||||| | ||| ||||||||| || ||| | |||| |||| | ||||||||
Sbjct 286 TATCTGAAGAGGATTTGGTGAATCTTG-TGATCGATG-TACTGGATGAT-ACAGACGAGT 342
Query 245 ACATTGATGTTGAGCTCATC-GAACGCCTTGC-AGATGGAAT-TATCGTCGATTTAAAAT 301
|||||||| ||| ||||||| ||| ||||| | ||| || || |||||||| ||||
Sbjct 343 ACATTGATATTGGGCTCATCAGAA-AACTTGCTTG-TGGGATAAAT-GTCGATTTGAAAT 399
Query 302 TCGAGAGCATTACAGATTTTGAGTTAACACCTGAGCTAGCTATATTTGC-TTCACTTAAG 360
||||||| ||||| ||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct 400 TCGAGAGGATTACGGATTTTGAGTTAACACCTGAGCTAGATATATTT-CGTTCACTTAAG 458
Query 361 ATTCCTTTGTATCATGGATGGCTAGTTGATCCC-CAGGATTTGGAAACTGTTGCTGCAAT 419
||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||
Sbjct 459 ATTCCTTTGTATCATGGATGGCTAGTTGATCCCAC-GGATGTGGAAATTGTTGCTGCAAT 517
Query 420 TGGAGGCAGATCTCATGATGACTTAAAGATTGCGCTTACTGCTTTGGAGACACAGACTGT 479
||||||||||||| |||||| ||| |||||||||||||| |||| || |||||||||||
Sbjct 518 CGGAGGCAGATCTCGTGATGAGTTAGAGATTGCGCTTACTACTTTAGACACACAGACTGT 577
Query 480 AAAGGCTCAAAATGATCAAAGTTCTGTTGATTTTGCTGCGTCGATTACTGCGTCTGCAGA 539
| | | | | ||||||||||||||||||| | || |||
Sbjct 578 ------T-A----G-T-----T-CTGTTGATTTTGCTGCGTC--T----GC------AGA 607
Query 540 GCATCGTGGATTGGGAAAGGGAGATACTGAAGAAGAGGAACTGCTGCTAAAAG-CCTTGA 598
||||| |||||||||||||||||||| ||||||||| ||| || || | |||| |||||
Sbjct 608 GCATCTTGGATTGGGAAAGGGAGATATTGAAGAAGATGAAATGGTG-TCAAAGGCCTTGG 666
Query 599 CATTATCTGAAATGGAAGCATCGTTAAAGGGAAGTTTTGATACTCACAGAGACTCAAATG 658
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 667 CATTATCTGAAATGGAAGCATCGTTAAAGGGAAGTTTTGATACTCA--GAGA-------G 717
Query 659 AAGGAGAGGTTGTGTCTGGATC-TGAGGATGTAAATCAAATTTCTGAGGATGACACATTG 717
|||||||||| || | || |||||||||| || ||||||||||||||||||
Sbjct 718 ---------TTGTGTCTGGGTCGTTAG-ATGTAAATCAGATCTCTGAGGATGACACATTG 767
Query 718 GTAACTGCTGTGGACGCTGCAGCTGGTTGTACTATCACCCTTGGCAGGAATATCTGTCAG 777
|||||| |||||||| || |||||||||| ||| |||||||||||| ||||||||||||
Sbjct 768 GTAACTTCTGTGGACATTGAAGCTGGTTGTGCTACCACCCTTGGCAGTAATATCTGTCAG 827
Query 778 CAGTCCAAGTTTGATGGTCAGTTTTCTTCTACGGAATCAGAAGAT 822
| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 828 CTGTCCAAATTTGATGATCAGTTTTCTTCTACGGAATCAGAAGAT 872
Score = 460 bits (249), Expect = 1e-128
Identities = 318/352 (90%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 943 TCAGTTTATGAAGTCGAGTCACTTCTTGGACAAAGCTCTCCGGAAGGGAAGGATACAAAT 1002
||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1101 TCAGTTTATGAAGTCCAGTCTCTTCTTGGACAAAGCTCTCCGGAAGGGAAGGGTACAAAA 1160
Query 1003 GGGCTCACGCAAGAAGAGGGTAAAGTGATCAAAGAATTCTT-GAAAGATAGTGCCAGTCA 1061
||||||||||||||||||||| || ||||||||| |||||| ||| || |||| || |||
Sbjct 1161 GGGCTCACGCAAGAAGAGGGTGAATTGATCAAAGGATTCTTTGAA-GAAAGTGTCACTCA 1219
Query 1062 ATTAACTTGGCATGGGCTCTATACCTTGGAAAATGACCTTGAAGAATGGGAACTTTGTGT 1121
| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1220 ACTAACTTGGCATGGGCTCTTTACCTTGGAAGATGACCTTAAAGAATGGGAACTTTGTGT 1279
Query 1122 CTTGTTCCGCAACAATCACTTCTCTACCATGCTGAAGCGTGAGGAAAAACTCTATACTTT 1181
| |||||||||||||||||||| ||||||||||| ||| ||| |||| ||||||||||||
Sbjct 1280 CCTGTTCCGCAACAATCACTTCGCTACCATGCTGCAGCATGAAGAAAGACTCTATACTTT 1339
Query 1182 GGTTACCGATCAAGGCTATCAGATGGAGCAAGACTTGGTTTGGGAAAGATTTAACCAGAT 1241
||||||| || |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1340 GGTTACCTATGAAGGCTATCAGATGCAGCAAGACTTGGTTTGGGAAAGATTCAACAAGAT 1399
Query 1242 AAATGGCGATTCTGCCTTCTTTACTGGTAACTTCACGGAGTTCAAATTCAAG 1293
|||||||||||||||||||||||||| |||||||| | |||| ||||||
Sbjct 1400 TGATGGCGATTCTGCCTTCTTTACTGGTTACTTCACGAAATTCATCTTCAAG 1451
Score = 60.2 bits (32), Expect = 5e-08
Identities = 47/54 (87%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1365 TGGCACTGGAGTTGCAGGAAGAAT-TCTGGGCTGGAGAAACTGGATCAGAGGTA 1417
|||| |||||||| || || ||| ||||||||||||||||||||||||||||
Sbjct 1540 TGGCGTTGGAGTTGGAGCAA-AATGACTGGGCTGGAGAAACTGGATCAGAGGTA 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5