BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354506
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22660.1 | Symbols: | F-box family protein with a domain of... 1491 0.0
AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 540 1e-152
AT4G22180.1 | Symbols: | F-box family protein with a domain of... 505 5e-142
AT4G22165.1 | Symbols: | F-box family protein with a domain of... 483 2e-135
AT4G22170.1 | Symbols: | F-box family protein with a domain of... 294 1e-78
AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8... 76.8 5e-13
> AT4G22660.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11914981-11916171 REVERSE
LENGTH=1191
Length=1191
Score = 1491 bits (807), Expect = 0.0
Identities = 963/1036 (93%), Gaps = 20/1036 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCAAACGCCTCAGTTTTGCTAATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGG 120
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 61 GTTTTCAAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGG 120
Query 121 TACTCTGCTTCGAAACAATGCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACTCTGCTTCGAAACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCC 180
Query 181 AAAGAC--AAA-AACAGC----A-A-TTCATGCACG---TTTTTCAATCCCGAGGACAAA 228
|||||| ||| |||| | | | |||||||||| |||||||||||||||||||||
Sbjct 181 AAAGACAAAAACAACAACAAAAACAGTTCATGCACGATTTTTTTCAATCCCGAGGACAAA 240
Query 229 GA-TTTTTTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGC 287
|| || ||| ||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 241 GACCAACTT-TACCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTCTAGC 299
Query 288 AACCTACGGAAGTTGGCTTCTTATGCAAGATTCAAAGTATAATTTATACATTTTGAATCC 347
|||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 300 AACCTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATAATCTATACATTTTGAATCC 359
Query 348 ATTCACCAAAGAG-AGTATCGATCTTCCGGCTGTGGAATCACAACAACCTGCCATGGTAA 406
||||||| | ||| || |||| |||||| ||| | |||||||||||| || ||||||||
Sbjct 360 ATTCACCTACGAGAAG-ATCGGTCTTCCCGCTATTGAATCACAACAAGTTGGCATGGTAA 418
Query 407 AGGTTGAACGAACCATAGATGATGATTTTATCACTTTCGGCGATCACAACCACGTTAAGT 466
||||||| | ||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 419 AGGTTGACCAAACCATAGATGATGATTTTCTAACTTTCGACGATCACAACCACGTTAAGT 478
Query 467 TATTTAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAG 526
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATTCAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAG 538
Query 527 ATTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTTTATGCGAAGAAAGGAGATA 586
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 539 AGTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTTTATGCCAAGAACGGAGATA 598
Query 587 AGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATC 658
Query 647 ACAAGCTTTACTCATTTAGCTACAGAGAGCTTTTCACAATCTTAGATTTTTCTGGAGAGA 706
|||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 659 ACAAGCTTTACTCATTTAGCTACAGAAATCTTTTCACAATCCTAGATTTTTCTGGAGAGA 718
Query 707 TTCCTCGACA-GACCTTTCAACGTTTTATGCATGTGTATAGATTTGAGTGGTTAAGTCCT 765
|||||||| | | |||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 719 TTCCTCGAAAAG-CCTTTCAATGTTTTATGCATGTCTATAGATCTGAGTGGTTAAGTCCT 777
Query 766 CGTAGTCGTCAACTAAGTAATTCATGGTGCCTTGCTGAGACAAAACTTGTAGTCACAGTA 825
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 CGTAGTCGTCAATTAAGTAATTCATGGTGCGTTGCTGAGACAAAACTTGTAGTCACAGTA 837
Query 826 ACCGGGGATGCCCTCTTGGTTGAAAGAATGTTAAGACCTAGGTCTAGAATCCAGTCATTC 885
||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 838 ACCGGAGATGTCCTCTTGGTTGAAAGAATGTTAAGACATTGGTCTAGAATCCAGTCATTC 897
Query 886 AACGTCTACAAGTTTTATTCGTCAGGGA-AtttttttGATAAATATGAACTTGCAGATTC 944
|||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||
Sbjct 898 AACGTCTACAAGTTTTATTCGTCAGGGACATTTCTT-GATAAATATGAACTTGCTGATTC 956
Query 945 TTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAATGAAGTTGA 1004
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 TTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACCGTGCTCGCCAATGAAGTTGA 1016
Query 1005 GGGACTCAATAGAAAT 1020
||||||| ||||||||
Sbjct 1017 GGGACTCCATAGAAAT 1032
> AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16,
similar to protein; blastp match of 28% identity and 3.1e-07
P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16
{Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234
FORWARD LENGTH=1182
Length=1182
Score = 540 bits (292), Expect = 1e-152
Identities = 579/713 (81%), Gaps = 38/713 (5%)
Strand=Plus/Plus
Query 26 CCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTAGTTTTCAAACGCCTCAGTTTTGCTA 85
||||||||||||||||||||||||||||| | ||||| ||| ||||||||| ||||||||
Sbjct 77 CCTGGTCGGAGCTTCCTCTAGATCTCTTGGATTTAGTGTTCCAACGCCTCAATTTTGCTA 136
Query 86 ATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGGTACTCTGCTTCGAAACAATGCGTGC 145
|||| | |||||| ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 137 ATTTCCAACGAGCCAAATCTGTGTGTTCGTCTTGGTACTCTGCTTCGAGACAATGCGTGA 196
Query 146 CCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAA-GAC-AAAAACAGCAATTCATG 203
|||||| | |||||||||||||||| || ||||||||| | | ||||| | ||||||||
Sbjct 197 CCAAAACTAAGATCCCTTGGCTGATTCTATTCCCCAAAAG-CGAAAAAAA-CAATTCATT 254
Query 204 CACGTTTTTCAATCCCGAGGACAAAGATTTTT-TATACAAAACGCAAGATCTTGGTGTGG 262
|||| | ||||||||||||| ||| | | |||||||||||||||||||||||||
Sbjct 255 CACGCTCCTCAATCCCGAGGAAAAACACAAACGT-TACAAAACGCAAGATCTTGGTGTGG 313
Query 263 AATTTGCCAAGAGTGTTTGTATAGCAACCTACGGAAGTTGGCTTCTTATGCAAGATTCAA 322
||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 314 AATTTGCGAAGTGTGTTTGTATAGCAACCTATGGAAGTTGGCTCCTTATGCAAGATTCAA 373
Query 323 AGTATAATTTATACATTTTGAATCCATTCACCAAAGAGAGTATCGATCTTCCGGCTGTGG 382
||| |||| || |||||||||||||||||||| ||||| ||| | ||||| ||||||
Sbjct 374 AGTGTAATCTAAACATTTTGAATCCATTCACCCGCGAGAGGATCAACCTTCCTCCTGTGG 433
Query 383 AATCACAACAACCTGCCATGGTAAAGGTT-GAACGAACCATAGATGAT-GATTTTATCAC 440
| ||||||| || || |||||||||| || |||| |||||||||| ||||| ||
Sbjct 434 AGTCACAACG---TGGCAAGGTAAAGGTTAGA-CGAATCATAGATGATAGATTTCG-CA- 487
Query 441 TTTCGG-CGATCACAACC-ACGTTAAGTT-ATTTAAAGGTAATAATACCGTACGTACCCC 497
|||| | |||||| | | | | || | || | | | || || | | | ||||
Sbjct 488 TTTCACACTATCACATCGGAAGCGA-GTCCAAATATATG-AGTA-TAG-G-A--T-CCCC 539
Query 498 TGTGTTTTGGATTGACGAGAAAACCAAAGATTACATAGCTCTGTGGGGGCTTGGATATTG 557
||||||||||||||||||||||||||||||||| |||| | | ||||| ||| || ||||
Sbjct 540 TGTGTTTTGGATTGACGAGAAAACCAAAGATTATATAGTTTTTTGGGGACTTAGAGATTG 599
Query 558 GTGTGTGGTTTATGCGAAGAAAGGAG-ATAAGTTGTGGAATCAAATTCCAGAAATTATTT 616
||||||||||| ||| |||||||| | ||| | ||||||||||||||| ||| | ||
Sbjct 600 GTGTGTGGTTTCTGCCAAGAAAGG-GTATACCTCGTGGAATCAAATTCCC-AAA--ACTT 655
Query 617 TAGATTCTCTTGACATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTA--CAGAG 673
| ||| || ||||||||| |||||||||||||||||||||| | | | | | | | |
Sbjct 656 CAAATTGTCGTGACATGGTGTACAAGGATCACAAGCTTTACTTCCTA-ACCAAGTCTG-G 713
Query 674 AGCTTTTCACAATCTTAGATTTTTCTGGAGAGATTCCTCGACAGACCTTTCAA 726
| ||| | |||||||||||||||||| |||||||| | ||| | ||| |||
Sbjct 714 TGGTTTA-A-AATCTTAGATTTTTCTGGTGAGATTCCACAACAAATCTT-CAA 763
Score = 119 bits (64), Expect = 8e-26
Identities = 119/145 (82%), Gaps = 6/145 (4%)
Strand=Plus/Plus
Query 879 GTCATTCAACGTCTACAAGTTTTA-T--TCGTCAGGGAAtttttttGATAAATATGAACT 935
||| ||| |||||||||| |||| | || |||||||| || |||| |||||||
Sbjct 950 GTCCTTCGACGTCTACAACATTTATTCATCATCAGGGAA-CTTGATGAT--ATATGAAAA 1006
Query 936 TGCAGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAA 995
| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1007 AGTTGATTCTTTGGGAGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCCCTCCAG 1066
Query 996 TGAAGTTGAGGGACTCAATAGAAAT 1020
|||| |||| ||||||||| |||||
Sbjct 1067 TGAAATTGATGGACTCAATGGAAAT 1091
> AT4G22180.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11738574-11739782 FORWARD
LENGTH=1209
Length=1209
Score = 505 bits (273), Expect = 5e-142
Identities = 787/1026 (77%), Gaps = 72/1026 (7%)
Strand=Plus/Plus
Query 17 ACCCTAATACCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTTTTCAAACGCCTC 75
|||| ||| |||||||||||||||||||||||||||||| || ||| ||| ||||||||
Sbjct 51 ACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTGCAGTGTTCGAACGCCTC 108
Query 76 AGTTTTGCTAATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGGTACTCTGCTTCGAAA 135
|| | ||| ||||| | |||||| ||||| || |||||||||||| |||| | |||| |
Sbjct 109 AGCTATGCAAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATCGAGA 168
Query 136 CAATGCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGACAAAAACAGC 195
|||| ||| |||| | ||||||||||||||||| |||||||| || || | |||| |
Sbjct 169 CAATCCGTTCCCATA---CAGATCCCTTGGCTGATTCTCTTCCCGGAATACGACAACAAC 225
Query 196 AATTCATGCACGTTTTTCAATCCCGAGGACAAAGATTTT-TTATACAAAACGCAAGATCT 254
|||||||||||||| |||||||||||||| |||| || ||||||| | |||||||
Sbjct 226 AATTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCCAAGTT-TACAAAATGAAAGATCT 284
Query 255 TGGTGTGGAATTTGCCAAGAGTGTTTGTA-TAGCAACCTACGGAAGTTGGCTTCTTATGC 313
|||||| |||||| | ||||||||||||| | |||||||||||||| ||||| |||||||
Sbjct 285 TGGTGTTGAATTTTCAAAGAGTGTTTGTACT-GCAACCTACGGAAGCTGGCTCCTTATGC 343
Query 314 AAGATTCAAAGTATAATTTATACATTTTGAATCCATTCACCAAAGAGAGTATCGATCTTC 373
|||| || ||||||| | || |||||||||| ||||||| | ||||| | |||| |
Sbjct 344 GAGATCCACTGTATAATCTCTATATTTTGAATCTATTCACCCACGAGAGGGTAAATCTAC 403
Query 374 CGGCTGTGGAATCACAACAACCTGCCATGGTAAAGGTTGAACGAACCATAGATGAT-GAT 432
| || | || ||||||| || |||||||||| |||||||||||||| ||||| | |
Sbjct 404 CTCCTTTCGAGTCACAACT---TGGCATGGTAAAGATTGAACGAACCATATATGATTGGT 460
Query 433 TTTA-TC-ACTTTCGGCGATCACAACCACGTTA--AGTTATTT-AAAGGTAATA-ATACC 486
|| | || || || | || ||||| || | ||| | ||| ||| || | |
Sbjct 461 TTCACTCTACACTC--C-ATTACAACG--GTAAGGAGT-ACCACAAACGTATTAGA-A-- 511
Query 487 GTACGTACCC-CTGTGTTTTGGATTGACGAGAAAACCAAAGATTACATAGCTCTGTGGGG 545
||| || || ||||||||||||| || |||||||| ||||||||| ||| | | |||||
Sbjct 512 -TAC-TATCCACTGTGTTTTGGATCGATGAGAAAACAAAAGATTACGTAGTTATATGGGG 569
Query 546 GCTTGGATA-TTGGTGTGTGGTTTATGCGAAGAAAGGAGATAAGTTGT-GGAATCAAATT 603
|||||| | || |||||||||||| | |||||||||||||| | || |||||||||||
Sbjct 570 ACTTGGA-AGTTCATGTGTGGTTTATTCCAAGAAAGGAGATAAAT-GTTGGAATCAAATT 627
Query 604 CCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGCTTTACT-CA-T 661
||||||| | | | ||| || | |||||||||||||||||||||||||||||| | |
Sbjct 628 CCAGAAACT-TCA-A-ATTGTCATCACATGGTTTACAAGGATCACAAGCTTTACTTCTCT 684
Query 662 ---T-TAGCTACAGAGA-GCTTTTCACAATCTTAGATTTTTCTGGAGAGATTCCTCGACA 716
| || ||||| | | | || || |||||| ||||| ||| |||||||||||| |||
Sbjct 685 ACGTCTACCTACAAATATGAATT-CAGAATCTTTGATTTCTCTAGAGAGATTCCTCAACA 743
Query 717 GACCTTTCAACGTTTTATGCATG-TGTATAG-ATTTGAGTGGTTAAGTCCTCGTAGTCGT 774
| ||||||| | | | | ||| || | || | || | |||| || || | || ||
Sbjct 744 AATCTTTCAAGGCTATGT-CATTATGCA-AGGACTT-ACA--TTAAATCGTCATCGTGGT 798
Query 775 CAACTAAGTAATTCATGGTGC--CT-TGCTGAGACAAAACTTGTAGTCACAGTAACCGGG 831
|||| | || || | | ||| || | ||| ||||||||||| ||||||||||| ||
Sbjct 799 CAACCAGGTTATCCCTT-TGCTACTAT--TGATACAAAACTTGTTGTCACAGTAACTGGA 855
Query 832 GATGCCCTCTT-GGTTGAAAGAAT-GTTAAGACCTAGGTCTAGAATC--CAG-TCATTCA 886
|||| ||| | |||||| ||||| || ||| || |||||||| ||| | ||
Sbjct 856 GATGTCCT-TAAGGTTGACAGAATAGTGGAGAAAGAGA-CTAGAATCTGCAGATTTTTTT 913
Query 887 ACGTCTACAAGTTTTATTCGTCAGGGAAtttttttGATAAATATGAACTTGCAGATTCTT 946
||||||||||| ||||||| || ||| | | | | ||||||||| | || ||||
Sbjct 914 ACGTCTACAAGGTTTATTCATCGGGG--TCCTATA-AGAAATATGAAAAAGTTGAATCTT 970
Query 947 TGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAATGA-AGTTGAG 1005
|||| ||||||||||| |||||||||||||| |||||| ||||||||||||| | | | |
Sbjct 971 TGGGGGACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTCGCCAATGACACT-GTG 1029
Query 1006 GGACTC 1011
||||||
Sbjct 1030 GGACTC 1035
> AT4G22165.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11734328-11735419 FORWARD
LENGTH=1092
Length=1092
Score = 483 bits (261), Expect = 2e-135
Identities = 582/727 (80%), Gaps = 61/727 (8%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACCATAACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCAAACGCCTCAGTTTTGCTAATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGG 120
||||||||||||||||| || | |||||| | |||||| ||||| || || || || ||
Sbjct 61 GTTTTCAAACGCCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTCGG 120
Query 121 TACTCTGCTTCGAAACAATGCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCC 180
||||||| ||||| ||||||||||||| || ||||||| ||| |||||| |||||||||
Sbjct 121 TACTCTGTTTCGAGACAATGCGTGCCCGAACGTCAGATCGCTTTGCTGATTCTCTTCCCC 180
Query 181 AAAGACAAA-AACAGCAATT-CATGCAC--GT---TT-TTCAATCCCGAGGACAAAGATT 232
||||| | | |||| | || || | || || || ||||||||||| || |||||
Sbjct 181 AAAGA-AGACAACACCGATAACA-GTACTTGTAAGTTGTTCAATCCCGACGAAAAAGACA 238
Query 233 TT-TTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGCAACC 291
|| ||||| | |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 239 AACTT-TACAAGATGCAAGATCTTGGTGTGGAATTTGCAAAGAGTGTTTGTAGGGCAACT 297
Query 292 TACGGAAGTTGGCTTCTTATGCAAGATTCAAAGTATAATTTATACATTTTGAATCCATTC 351
|| ||||||||||| || |||||||||||||||||| || |||||||||||||| ||||
Sbjct 298 TATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATCATCTATACATTTTGAATATATTC 357
Query 352 AC-CA-AAGAGAGTATCGATCTTCCGGCTGTGGAATCACAACAACCTGCCATGGTAAAGG 409
|| | ||||| | ||| ||||||| ||||||| ||||||| || ||||||||||
Sbjct 358 ACTCGCAAGAG-G-ATCAATCTTCCTCCTGTGGAGTCACAACT---TGGCATGGTAAAGA 412
Query 410 TTGAACGAACCATAGATGAT-GATTTTATCACTTTCGGCGATCACAACCACGT-TAAGTT 467
|||||||||||||| ||||| | ||| |||||| | | ||| ||| | || | |
Sbjct 413 TTGAACGAACCATATATGATTGGTTT---CACTTTT--C-A-CACGGTCAC-TATA-GCT 463
Query 468 ATTTAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAGA 527
||| | ||| || | ||||||||||||||||||||||| || |||||||
Sbjct 464 -TTTC--GCTAA-------GT---T-CCCCTGTGTTTTGGATTGACGAGGAATCCAAAGA 509
Query 528 TTACATAGCTCTGTGGGGGCTTGGA-TATTGGTGTGTGGTTTATGCGAAGAAAGGAGATA 586
||| |||| | ||||||| |||||| | || |||||||||||||| |||||||||||||
Sbjct 510 TTATATAGTTATGTGGGGACTTGGAGT-TTATTGTGTGGTTTATGCCAAGAAAGGAGATA 568
Query 587 AGTTGTGGAATCAAATTCCAGAAA-TT-ATTTTAGATTCTCTTGACATGGTTTACAAGGA 644
| |||||||||||| || ||| || || || || | | |||||||||||||||||
Sbjct 569 CCTCGTGGAATCAAATCCCCCAAACTTCATATT---TT-TAT-GACATGGTTTACAAGGA 623
Query 645 TCACAAGCTTTACT-CATTTAGC--TACAGAG-AGCTTTTCACAATCTTAGATTTTTCTG 700
|||||||||||||| | || ||| ||| | | | |||| || |||||||||||||||||
Sbjct 624 TCACAAGCTTTACTTC-TTAAGCAGTACTG-GTA-CTTTCCA-AATCTTAGATTTTTCTG 679
Query 701 GAGAGAT 707
||||||
Sbjct 680 AAGAGAT 686
Score = 111 bits (60), Expect = 1e-23
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 940 GATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAATGAA 999
||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 844 GATTCTTTGGGTGATGAGGCATTGCTTTTGGATCTAGGCATCACTGTGCTCGCCAGTGAC 903
Query 1000 GTTGAGGGACTCAATAGAAAT 1020
||||||||| |||| ||||||
Sbjct 904 GTTGAGGGATTCAAAAGAAAT 924
> AT4G22170.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11736653-11737744 FORWARD
LENGTH=1092
Length=1092
Score = 294 bits (159), Expect = 1e-78
Identities = 314/386 (81%), Gaps = 21/386 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTA-GATCTCTTGAACTT 59
||||||| ||| || ||||||||| ||||||| || ||||||| | ||||||||||||||
Sbjct 1 ATGGAGAGGAAACATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACTT 59
Query 60 AGTTTTCAAACGCCTCAGTTTTGCTAATTTTCGA-CGAGCGAAATCGGTGTGTTCGTCTT 118
|| ||| |||||||||| |||||||| |||| | ||||| | || |||||||||||||
Sbjct 60 GGTGTTCGAACGCCTCAGCTTTGCTAA-TTTCAACCGAGCCAGGTCCGTGTGTTCGTCTT 118
Query 119 GGTACTCTGCTTCGAAACAATGCG-TGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTC 177
||||||||||||||| ||||| || |||||||||||||||||| ||||||||| ||||||
Sbjct 119 GGTACTCTGCTTCGAGACAAT-CGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTTC 177
Query 178 CCCAAAGACAA-AA-A-CA-G--CAA---TTCATGCACGTTTTTCAATCCCGAGGACAAA 228
|| ||||||| || | || | ||| |||||||||||| ||||||||||| || |||
Sbjct 178 CCTGAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAAAA 237
Query 229 GATTTT-TTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGC 287
|| || |||||||||||| |||||| || ||||||||| ||||||||||||| ||
Sbjct 238 GACAAACTT-TACAAAACGCAACATCTTGATGAGGAATTTGCAAAGAGTGTTTGTAGGGC 296
Query 288 AACCTACGGAAGTTGGCTTCTTA-TGCAAGATTCAAAGTATAATTTATACATTTTGAATC 346
|||||| ||||||||| ||| || || |||| | || |||| | || ||||||||||
Sbjct 297 AACCTATGGAAGTTGG-TTCCTAATGGTAGATCCTCTGTTTAATCTCTATATTTTGAATC 355
Query 347 -CATTCACCAAAGAGAGTATCGATCT 371
| || ||| ||||| ||| ||||
Sbjct 356 TCTTT-ACCCGCGAGAGAATCAATCT 380
> AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8174598-8175715
REVERSE LENGTH=807
Length=807
Score = 76.8 bits (41), Expect = 5e-13
Identities = 118/153 (77%), Gaps = 13/153 (8%)
Strand=Plus/Plus
Query 576 GAAAGGAGATAAGTTG-TGGAATCAAATTCCAGAAATTATTTTAGATTCTCTT-GACATG 633
|||||||||| | || |||||||||| ||| ||| | || ||||| | || |||||
Sbjct 276 GAAAGGAGAT-ACATGTTGGAATCAAA-TCCCCAAA--ACTTCAGATTGT-TTCCACATG 330
Query 634 GTTTACAAGGATCACAAGCTTTACT-CATTTAGCTACAGAG--AGCTTTTCACAATCTTA 690
||||||||||||||||||||||||| | | | | | | | || ||| || ||||||
Sbjct 331 GTTTACAAGGATCACAAGCTTTACTTCCTAAA-CAAAACTGGTAG-TTT-CAAAATCTTT 387
Query 691 GATTTTTCTGGAGAGATTCCTCGACAGACCTTT 723
||||||| |||||| ||||| | ||| ||||||
Sbjct 388 GATTTTTGTGGAGATATTCCACAACAAACCTTT 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5