BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354556
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22060.1 | Symbols: | F-box family protein with a domain of... 797 0.0
AT4G21740.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 542 5e-153
> AT4G22060.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11687620-11689021 FORWARD
LENGTH=1402
Length=1402
Score = 797 bits (431), Expect = 0.0
Identities = 825/1004 (82%), Gaps = 71/1004 (7%)
Strand=Plus/Plus
Query 547 GAAAAAGAGAAAG-TGTATAGGATACAAGATCTTGGTGTTGAGTTCGTAAGTAGTCATTG 605
||||||||| ||| | |||||||| ||| ||||||||||||| |||| || |||||| ||
Sbjct 229 GAAAAAGAG-AAGATATATAGGATTCAAAATCTTGGTGTTGAATTCGCAAATAGTCACTG 287
Query 606 TTTGGCAATTTATGGAAGTTGGCTCTTTATGAAAGATCCTAGATATAATCTCTATATTAT 665
|||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 288 TTTGGCGATTTATGGAAGTTGGCTCTTTATGAGAGATCCTAGATATAAGCTCTATATAAT 347
Query 666 GAATCTATTTACTCGCGAGAGGATTAATCTTCCGTCTGTGGAGGCAGAATTTGGTAGAAT 725
|||| | |||||||| ||||| ||||||||||||||||||||| | |||||||||| ||
Sbjct 348 GAATTTGTTTACTCGTGAGAGAATTAATCTTCCGTCTGTGGAGTCTCAATTTGGTAGGAT 407
Query 726 AAAGATTGAACGAACCATA-GATGATATGTTCCGTATA-AAAA-TTGATGATGAATAT-- 780
||||||||||| || | | |||||| |||| | |||| |||| ||||||||||||||
Sbjct 408 AAAGATTGAACAAATTA-ACGATGATTTGTT-C-TATAGAAAAGTTGATGATGAATATGA 464
Query 781 TTCCATTATCCTGAAAA-AGAC---ATCCATATTGAGCT--CCCTATATTGTGGATAGAT 834
|| | ||||| |||| | || ||| ||||| || | || |||||| |||||||||
Sbjct 465 TT--ACCATCCT-AAAAGACACATGATCGATATT-AG-TGACCATATATTATGGATAGAT 519
Query 835 GAAAAAACCAAAGATTATGTGGTTATGTGGTTAATGCAAAG-GC-AATACCCGTGTCTGG 892
|| || |||||||||||||||||||||||| | || | || || |||| | | | |||
Sbjct 520 GATAAGACCAAAGATTATGTGGTTATGTGG-TCATTC-GAGTGCGGATACACATATATGG 577
Query 893 TTTATTGTAGAAATGGAGATAATCTTTGGAA--ACATGCTATTAATGAT-TA-C-A--G- 944
||||||| |||| |||||||||| ||||||| || || | | |||| || | | |
Sbjct 578 TTTATTGCAGAACTGGAGATAATATTTGGAATTAC-CGC-AGTCTTGATATATCGACTGT 635
Query 945 TGATATGGTATACAAAGATCATAAGATTTACTTGTATA-ATAGCTCGCGTGATGTCAAAG 1003
| | || |||||||||||||||||||| |||||||||| || | | |||||||||||||
Sbjct 636 TAACATAGTATACAAAGATCATAAGATGTACTTGTATAGTTA-CACTCGTGATGTCAAAG 694
Query 1004 TTTTGGAATTTTCTGGAGATATTCCACGACAAATCTTTGAAACGCACGTTAACTATGATG 1063
| ||||| |||| || ||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 695 TCTTGGATTTTTGTGAAGATATTCCGCGACAAATCTTTGAAACGCAAGTTAATTATGAT- 753
Query 1064 A-GGCGATAGAAAAGGGAATGCCAGAACGTATTTACCCAGAGCTTGGTGATGT-TTGGCA 1121
| || ||||| || || ||||| | | | | | ||| |||||| || | |
Sbjct 754 ATATTAATGGAAAAAGG-AT-TCAGAA-G---TGA--C---G-TTGATGATGTGTT-GAA 800
Query 1122 T-ATCAAAA-GAACGCATCTTGTAGTCACACTGACTGGAGAAACCCTCAGAGTTAAGAGC 1179
| || |||| ||| ||||||||||||||| | | |||||| ||| ||||||||||||
Sbjct 801 TGATAAAAAGGAA--CATCTTGTAGTCACATTAAATGGAGATGTCCTTAGAGTTAAGAGC 858
Query 1180 ATGATAT-GGAGTCATCTG-GATGTTTGGTCCTTCCGCATTTACAAACTAAATTCTTCAA 1237
| |||| ||| | || | || |||||||||||| |||| ||||| | |||||||| |
Sbjct 859 AAAATATGGGA-TAAT-AGTGACGTTTGGTCCTTCTGCATCTACAAGTTGAATTCTTCTA 916
Query 1238 ATACTGACTGGGAGAAACTTACTTCTTTGGGAGACGAGGCAGTACTTTTGGATCAAGGTA 1297
||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 917 ATACTTACTGGGAGAAACTCACTTCTTTGGGAGACGAGGCAATACTTTTGGATCTAGGTA 976
Query 1298 TCACTGTGCTAGCCAGCGCCACCGAAGGAATCAATAGAAATTCAATATATTTCAGTGGTT 1357
||||||| || |||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 977 TCACTGTACTTGCCAACACCATCGAAGGAATCAATAGAAATTCAATATATTTCAGTGGTT 1036
Query 1358 ATCAT-GAT-TC-TGAAT--ATGAT--GATCGTGTTTGGAGTGAAAAAGATATATT-TGT 1409
||||| | || | | | | ||| |||| ||||||||||||||||||||| || |||
Sbjct 1037 ATCATCGCCCTCATTATTTCA-GATTCGATCATGTTTGGAGTGAAAAAGATAT-TTGTGT 1094
Query 1410 CTTCAATCTCGACACACAAGAAGTTGAAAGACCACATCAAAGTTTTTGTTCGTCCATTCA 1469
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1095 CTTCAATCTTGACACACAAGAAGTTGAAAGACCACATCAAAGTATTTGTTCGTCCATTCA 1154
Query 1470 ATTATCCGATGCACGATGGTTTGTGCCAAATTTCAAACATATAT 1513
| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1155 AATATCTGGTGCACGATGGTTTGTGCCAAATTTCAAACATATAT 1198
Score = 56.5 bits (30), Expect = 7e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 519 CCTTGGCTCATTATGTTTCCAGAAAAAGGAAAA 551
||||||||||||||||||||||||||||| |||
Sbjct 169 CCTTGGCTCATTATGTTTCCAGAAAAAGGTAAA 201
> AT4G21740.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G30515.1);
Has 20 Blast hits to 20 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11545926-11546434
FORWARD LENGTH=509
Length=509
Score = 542 bits (293), Expect = 5e-153
Identities = 370/407 (91%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCTTTTCTTAAACCGCGTTAGA---T-CT--TCATCGATCTTCCCATTCACTATA 54
||||||| | ||||||||||||||||| | || || |||||||| ||||| ||||||
Sbjct 1 ATGGCTCATCTCTTAAACCGCGTTAGATCTTCCTGGTCGTCGATCTTACCATTAACTATA 60
Query 55 ACATTCCTCGTTATCTTCACCGGCAACTCACTCGCCGGAGAATTACGTCCTTCAGATCAT 114
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACATTCCTCGTCATCTTCACCGGAAACTCACTCGCCGGAGAATTACGTCCTTCCGATCAT 120
Query 115 GGCCTACAGTATCAATTCAGCTCACCACCGACTGAATCTAACTCACCACCGGGTAAAATG 174
||| ||||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||
Sbjct 121 GGCTTACAGTACCAATTCAGCTCACCACCGACAGAATCTCACTCACCTCCGGGAAAAATG 180
Query 175 ATGTCCTTCTTCGGAGATTCACATTCTTCTTCTCCTCCTCCTTCTCACTCTCAGCTCCTC 234
| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AAGTCCTTCTTTGGAGATTCTCATTCTTCTTCTCCTCCTCCTTCTCACCCTCAGCTCCTC 240
Query 235 CCTAAAGCTACGGCGGCAGACGGTGGAGACGATGATTCTTGGTGGAGAGACGGAGCTGGG 294
|||||||| |||||||||||||| |||||||| |||||||||||| |||| |||||||||
Sbjct 241 CCTAAAGCCACGGCGGCAGACGGCGGAGACGACGATTCTTGGTGGCGAGATGGAGCTGGG 300
Query 295 AACAGACGTGATCACGTGATGAGGCACGTTTTTCTTGCGGCGAGTATCATCTGTGGTGTC 354
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 301 ATCAGACGTGATCACGTGATGAGGCACGTGTTTCTTGCGGCGAGTATCATCTGCGGCGTC 360
Query 355 TCCGGTGTTGCGCTTCTTGTTGTTTTTACTTTGATTTATTTCTTTAG 401
||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 361 TCCGGCGTTGCGCTTCTGGTGGTTTTTACTTTGATTTACTTCTTTAG 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5