BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354569

Length=1602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   472    6e-132
  AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:117873...   322    7e-87 


> AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799

 Score =  472 bits (255),  Expect = 6e-132
 Identities = 306/331 (92%), Gaps = 2/331 (1%)
 Strand=Plus/Plus

Query  782   GGT-ATCCCAGGAAATCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCT  840
             ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  802   GGTCATCCCAGGAAATCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCT  861

Query  841   GATAGTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTG  900
             |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct  862   GATACTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTG  921

Query  901   GGTGAACCCCTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCT  960
             |||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  922   GGTGAATCACTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCT  981

Query  961   GTGGCCAACTCCATCATTTCGATGTACTCAAAATGTGAGGACGCCGAGGC-GCGGAAACT  1019
             |||| |||||| ||||||||||||||||||||||| | |||| | ||||| |||||||||
Sbjct  982   GTGGGCAACTCGATCATTTCGATGTACTCAAAATGCGGGGACACGGAGGCTGCGGAAACT  1041

Query  1020  TTGTTTGAAGAATTATTGTGCAAGGATGTTATTTCTTGGAATGCAATCCTTAATGGGTTT  1079
              |||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct  1042  GTGTTTGAAGAATTAGTGTGCAGGGATGTTATTTCTTCGAACGCAATCCTTAATGGGTTT  1101

Query  1080  GCTGCAAATGGAATGTTCGAGGAAGCATTTG  1110
             ||||||||||||||||| || ||||||||||
Sbjct  1102  GCTGCAAATGGAATGTTTGAAGAAGCATTTG  1132


 Score =  267 bits (144),  Expect = 3e-70
 Identities = 195/219 (89%), Gaps = 6/219 (3%)
 Strand=Plus/Plus

Query  563  CTGTTGGATTGTTCGTTGAGATGATTCAGAAGGGATATGAGTTTGATTCTACGACGCTCT  622
            |||||||||||||  ||||||||||||| || ||| ||||||||||||| || ||||| |
Sbjct  515  CTGTTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTT  574

Query  623  TACTTGCAGCTTCGGCGTTATCCACGT-TACATCTTTCAAAG-AAAT-TTCCAATGGTTC  679
            ||||||||||||| |||||||| | || ||||||||||  || |||| || ||||| |||
Sbjct  575  TACTTGCAGCTTCTGCGTTATCTA-GTCTACATCTTTC-GAGAAAATGTT-CAATGCTTC  631

Query  680  ATTGTTTAGCAATAGAGACTAGTTTGGTTTCGGATTCTAGTTTGTGCAATGCATTGATGA  739
            |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||
Sbjct  632  ATTGTTTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGA  691

Query  740  TTCTATATGCAAAAGGCGAGGACTTGAGCTCCACAGAGT  778
             ||||||||||||||||||| ||||||||||| ||||||
Sbjct  692  ATCTATATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGT  730


 Score =  148 bits (80),  Expect = 1e-34
 Identities = 98/107 (92%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  1407  GGGACCTTACTTCAGCATTCCTGCTGTTCGAGACGATATCGGAAACAAGGGATCTCACAT  1466
             ||||||| |||||||||||||||| ||| |||||||| || |||||||| ||||||||||
Sbjct  1580  GGGACCTAACTTCAGCATTCCTGCGGTTAGAGACGATGTCCGAAACAAGAGATCTCACAT  1639

Query  1467  CTTGGAACTCTGTTATCGATGGCTGCGCATCAAGTGGTCACCATTTA  1513
             ||||||||||||| |||  ||||||||||||||||||||||||||||
Sbjct  1640  CTTGGAACTCTGTAATCTCTGGCTGCGCATCAAGTGGTCACCATTTA  1686


 Score =  111 bits (60),  Expect = 2e-23
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  1282  TCTTGTGATTCGTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAATG  1341
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1516  TCTTGTGATTCCTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAG  1575

Query  1342  CTAGGG  1347
             ||||||
Sbjct  1576  CTAGGG  1581


 Score = 93.5 bits (50),  Expect = 6e-18
 Identities = 58/61 (95%), Gaps = 3/61 (5%)
 Strand=Plus/Plus

Query  1110  GAGGGAAGAGCAGTTCATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGA-CATTAGA  1167
             ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct  1231  GAGGGAAGAGCAGTTCATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGA  1289

Query  1168  G  1168
             |
Sbjct  1290  G  1290


> AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:11787313-11789280 
REVERSE LENGTH=1064
Length=1064

 Score =  322 bits (174),  Expect = 7e-87
 Identities = 197/208 (95%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  157  GGATCTTCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTACA-AACGTTCATGCCATTAT  215
            |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct  365  GGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTA-AGAACGTTCATGCCATTAT  423

Query  216  AGATAAGGAAATTGCAGGAGAAATAAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA  275
            ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  424  AGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA  483

Query  276  AGGAGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTTTTGGAGGAGGTTC  335
            |||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| |
Sbjct  484  AGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGC  543

Query  336  AGTCTTTAGCGGATGGATTCCATTCAAT  363
            ||||||||||||||||||||||||||||
Sbjct  544  AGTCTTTAGCGGATGGATTCCATTCAAT  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 79116058920


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5