BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354574

Length=1230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:117873...   316    2e-85
  AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   267    2e-70


> AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:11787313-11789280 
REVERSE LENGTH=1064
Length=1064

 Score =  316 bits (171),  Expect = 2e-85
 Identities = 196/208 (94%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  106  GGATCTTCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTACA-AACGTTCATACCATTAT  164
            |||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct  365  GGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTA-AGAACGTTCATGCCATTAT  423

Query  165  AGATAAGGAAATTGCAGGAGAAATAAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA  224
            ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  424  AGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCCA  483

Query  225  AGGAGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTTC  284
            |||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| |
Sbjct  484  AGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGC  543

Query  285  AGTCTTTAGCGGATGGATTCCATTCAAT  312
            ||||||||||||||||||||||||||||
Sbjct  544  AGTCTTTAGCGGATGGATTCCATTCAAT  571


> AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799

 Score =  267 bits (144),  Expect = 2e-70
 Identities = 195/219 (89%), Gaps = 6/219 (3%)
 Strand=Plus/Plus

Query  512  CTGTTGGATTGTTCGTTGAGATGATTCAGAAGGGATATGAGTTTGATTCTACGACGCTCT  571
            |||||||||||||  ||||||||||||| || ||| ||||||||||||| || ||||| |
Sbjct  515  CTGTTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTT  574

Query  572  TACTTGCAGCTTCGGCGTTATCCACGT-TACATCTTTCAAAG-AAAT-TTCCAATGGTTC  628
            ||||||||||||| |||||||| | || ||||||||||  || |||| || ||||| |||
Sbjct  575  TACTTGCAGCTTCTGCGTTATCTA-GTCTACATCTTTC-GAGAAAATGTT-CAATGCTTC  631

Query  629  ATTGTTTAGCAATAGAGACTAGTTTGGTTTCGGATTCTAGTTTGTGCAATGCATTGATGA  688
            |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||
Sbjct  632  ATTGTTTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGA  691

Query  689  TTCTATATGCAAAAGGCGAGGACTTGAGCTCCACAGAGT  727
             ||||||||||||||||||| ||||||||||| ||||||
Sbjct  692  ATCTATATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGT  730


 Score =  265 bits (143),  Expect = 9e-70
 Identities = 162/171 (95%), Gaps = 1/171 (1%)
 Strand=Plus/Plus

Query  731  GGT-ATCCCAGGAAATCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCT  789
            ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  802  GGTCATCCCAGGAAATCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCT  861

Query  790  GATAGTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTG  849
            |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct  862  GATACTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTG  921

Query  850  GGTGAACCCCTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCT  900
            |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  922  GGTGAATCACTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCT  972


 Score =  228 bits (123),  Expect = 1e-58
 Identities = 140/148 (95%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  905   AAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACCGTGGTTTCAATAACTTCCA  964
             |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  1145  AAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACTGTGGTTTCAATAACTTCCA  1204

Query  965   TATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTTCATGGTTATACGGTTCGC-  1023
             |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct  1205  TATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTTCATGGTTATACGGTTCGCA  1264

Query  1024  TGGGAGATGCAATCCAGAGCTTTAGAGG  1051
             ||| |||||||||||||||| |||||||
Sbjct  1265  TGG-AGATGCAATCCAGAGCATTAGAGG  1291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60441456180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5