BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354582
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21903.2 | Symbols: | MATE efflux family protein | chr4:116... 2134 0.0
AT4G21910.4 | Symbols: | MATE efflux family protein | chr4:116... 1659 0.0
> AT4G21903.2 | Symbols: | MATE efflux family protein | chr4:11620998-11623797
REVERSE LENGTH=1765
Length=1765
Score = 2134 bits (1155), Expect = 0.0
Identities = 1361/1461 (93%), Gaps = 11/1461 (1%)
Strand=Plus/Plus
Query 1 ATGAA-GGTGTCAAATGAGACGGT-G-GAG-AGAATCGAACTCCGGCAACCGTTGGTGGA 56
||||| || ||||||||||||||| | ||| |||||||||||||| | ||||||||||||
Sbjct 60 ATGAATGG-GTCAAATGAGACGGTGGAGAGAAGAATCGAACTCCGACGACCGTTGGTGGA 118
Query 57 CACGGAGAAGAAACCTCGGTTCGAGGTCGGGCTCGAAAGCGTGTTAACTGATAGTAGCTT 116
|||||||||||||| || ||| || ||||||||||| ||||||||||| || ||||||||
Sbjct 119 CACGGAGAAGAAACTTCCGTTAGAAGTCGGGCTCGAGAGCGTGTTAACGGAGAGTAGCTT 178
Query 117 GCCTTACCGGAGGCGCGTGTACTTAGGCGTGTGCATAGAGTTGAAACTACTTTTCCGGTT 176
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||
Sbjct 179 GCCTTACCGGAGGCGCGTGTACTTAGGCATGTGCATAGAGTTAAAACTACTTCTCCGGTT 238
Query 177 GGCACTTCCGGCGATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 236
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGCACTTCCGGCTATACTTGTCTATTTAATCAACGGTGGAATGGGTATTTCCGCTCGTAT 298
Query 237 CTTCGCCGGACATCTCGGCAGTAAC-CAACTCGCCGCCGCGTCCATCGGAAACAGCTGCT 295
||||||||||||||| |||||| || ||||| ||||| || ||||||||||||||| |||
Sbjct 299 CTTCGCCGGACATCTAGGCAGT-ACACAACTAGCCGCGGCATCCATCGGAAACAGCAGCT 357
Query 296 TCAGTCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 355
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCAGCCTCGTTTATGCCCTCATGTTGGGCATGGGTAGTGCGGTCGAGACACTATGTGGAC 417
Query 356 AAGCCTATGGAGCCCATCGATACGAGATGCTTGGGATCTATCTACAAAGAGCAACCATTG 415
|||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 AAGCGTATGGTGCCCACCGGTACGAGATGCTTGGGATCTATCTCCAAAGAGCAACCATTG 477
Query 416 TCCTTGCTCTTGTTGGCTTACCTATGACAATACTATACACCTTCTCGTACCCGATTCTTC 475
|||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||
Sbjct 478 TCCTTGCTCTAGTTGGCTTTCCCATGACAATACTATACACTTTTTCGTACCCGATTCTTC 537
Query 476 TCCTCTTAGGCGAGCCCAAAACGGTATCATACATGGGATCTTTATACATCGCCGGACTCA 535
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCTCTTAGGCGAGCCTAAAACGGTATCATACATGGGATCTTTATACATCGCCGGACTCA 597
Query 536 TCCCTCAAATCTTTGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAA 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCCCTCAAATCTTCGCTTACGCCGTCTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAA 657
Query 596 GCGTGGTGGCTCCC-AGCGCGTACATCTCAGCCGCCGCACTCCTCCTCCAGATATCGCTT 654
|||| ||||| ||| || |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 658 GCGTAGTGGC-CCCGAGTGCGTACATCTCAGCCGCCGCCCTCGTCCTCCAGATATCGCTG 716
Query 655 TCGTGGATCACCGTTTATGTAATGGGCTTGGGCCTCATGGGTATAGCTTATGTTCTTACG 714
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 717 ACGTGGATCACCGTTTACGCAATGGGCCAAGGCCTCATGGGTATAGCTTATGTTCTTACT 776
Query 715 ATTTCTTGGTGGGTCATTGTTGGAGCCCAAACGTCTTACATTATAGTTAGCGTAAGGTTT 774
|| ||||||||| |||| |||||||||||||||| |||| ||||| |||||||||||||
Sbjct 777 ATCTCTTGGTGGTTCATAGTTGGAGCCCAAACGTTTTACGTTATAACTAGCGTAAGGTTT 836
Query 775 AAGGACACTTGGACTGGAGTTAGCTGGAAATC-TCTCCATGGTCTTTGGAGCTTCTTTAA 833
|| |||||||||||||| ||||||||||||| | | |||||||||||||||||||||||
Sbjct 837 AAAGACACTTGGACTGGTTTTAGCTGGAAATCGT-TACATGGTCTTTGGAGCTTCTTTAA 895
Query 834 ACTATCTGCTGGCTCTGCTGTAATGATCTGTTTGGAATTGTGGTATACACAGATTCTGGT 893
||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 896 ACTGTCTGCTGGCTCTGCGGTCATGATCTGTTTGGAACTGTGGTATACACAGATTCTGGT 955
Query 894 TCTTCTCGCCGGTTTGCTCAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATATGTAT 953
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 956 TCTTCTCGCTGGTTTGCTTAAAGATCCTGCACTCTCTCTAGATTCTCTATCTATCTGTAT 1015
Query 954 GTCAATTTCAGCATTATCATTCATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTGTGCG 1013
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 1016 GTCAATTTCAGCATTATCATTCATGGTCTCCGTTGGCTTTAATGCTGCTGTAAGTGTACG 1075
Query 1014 TACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCCGTGTTGTTCTCTACATGGACGGC 1073
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||
Sbjct 1076 TACAAGTAATGAGCTTGGAGCAGGAAATCCGAAATCGGCGTTATTCTCTACATGGACAGC 1135
Query 1074 GACTTTTGTTTCCTTCGTGATCTCCGTCGTGGAGGCACTTGTCGTGATTGCGTCACGTGA 1133
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 GACTTTTGTATCCTTCGTGATCTCCGTCGTAGAGGCACTTGTCGTGATTGCGTCACGTGA 1195
Query 1134 TAACGTCAGCTACATTTTCACGTCAGATGCTGACGTGGCTAAAGCCGTCTCTGATCTCTG 1193
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 1196 CAACGTCAGCTACATTTTCACGTCGGATGCTGACGTGGCTAAGGCCGTCTCTGACCTATG 1255
Query 1194 TCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCCTTTTCTCGCCGTCACCATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGC 1315
Query 1254 AGTGGGATGTGGATGGCAAACATACGTGGCATATGTGAACGTTGGTTGTTACTATATTGT 1313
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 1316 AGTGGGATGTGGATGGCAGACATACGTGGCATATGTGAATATTGGTTGTTACTATATAGT 1375
Query 1314 TGGTATTCCCATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCCAAGGGAATATG 1373
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1376 TGGTATTCCAATTGGATGTATTCTCGGCTTCACTTTCAATTTTCAAGCAAAGGGGATATG 1435
Query 1374 GACCGGGATGATTGGAGGTACCCTCATTCAAACACTCATCTTACTTTACGTCACATATCG 1433
|||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1436 GACCGGGATGATTGGAGGCACCCTCATGCAAACACTAATCTTACTTTACGTCACGTATCA 1495
Query 1434 AGCTGATTGGGATAAAGAGGT 1454
||| |||||||||||||||||
Sbjct 1496 AGCAGATTGGGATAAAGAGGT 1516
> AT4G21910.4 | Symbols: | MATE efflux family protein | chr4:11625443-11629417
REVERSE LENGTH=2013
Length=2013
Score = 1659 bits (898), Expect = 0.0
Identities = 1225/1383 (89%), Gaps = 22/1383 (2%)
Strand=Plus/Plus
Query 83 TCGGGCTCGAAAGCGTGTTAACTGATAGTAG-CTTGCCTTACCGGAGGCGCGTGTACTTA 141
|||| || || || || ||||| || |||| ||| || |||||||||||||||||||||
Sbjct 262 TCGGACTAGAGAGTGTTTTAACGGAGCGTAGCCTT-CCGTACCGGAGGCGCGTGTACTTA 320
Query 142 GGCGTGTGCATAGAGTTGAAACTACTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTAT 201
|| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 GGGGCATGCATAGAGATGAAGCTACTTTTCCGGTTGGCACTTCCGGCGATACTTGTCTAT 380
Query 202 TTAATCAACGGTGGAATGGGTATTTCCGCTCGTATCTTCGCCGGACATCTCGGCAGTAAC 261
||| ||||| | |||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 381 TTAGTCAACAGCGGAATGGGTATTTCCGCTCGGATCTTCGCCGGACATCTCGGTAAAAAT 440
Query 262 CAACTCGCCGCCGCGTCCATCGGAAACAGCTGCTTCAGTCTCGTTTATGCCCTCATGTTG 321
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 441 GAGCTCGCCGCCGCGTCCATCGGAAACAGCTGCTTCAGTCTCGTCTATGGCCTCATGTTA 500
Query 322 GGCATGGGTAGTGCGGTCGAGACACTATGTGGACAAGCCTATGGAGCCCATCGATACGAG 381
|| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 501 GGTATGGGCAGTGCAGTCGAAACACTATGTGGACAAGCCTATGGAGCCCATCGTTACGAG 560
Query 382 ATGCTTGGGATCTATCTACAAAGAGCAACCATTGTCCTTGCTCTTGTTGGCTTACCTATG 441
||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| || |||
Sbjct 561 ATGCTTGGGATCTATCTCCAAAGAGCAACAATAGTCCTCGCTCTAGTTGGCTTGCCCATG 620
Query 442 ACAATACTATACACCTTCTCGTACCCGATTCTTCTCCT-CTTAGGCGAGCCCAAAACGGT 500
||| |||||||||||||||||||||| ||||| |||| | |||| || |||||||||||
Sbjct 621 ACATTACTATACACCTTCTCGTACCCTATTCTAATCCTAC-TAGGGGAACCCAAAACGGT 679
Query 501 ATCATACATGGGATCTTTATACATCGCCGGACTCATCCCTCAAATCTTTGCTTACGCCGT 560
|| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 680 GTCGTACATGGGATCCAAATACATCGCCGGGCTCATCCCTCAAATCTTCGCTTACGCCGT 739
Query 561 CTACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAAGCGTGGTGGCTCCC-AGCGCGTACA 619
| |||||||||||||||||||||||||||||||||||||||| || ||| ||||| | ||
Sbjct 740 CAACTTCACGGCCCAAAAGTTCCTCCAGGCCCAAAGCGTGGTTGC-CCCGAGCGCCTTCA 798
Query 620 TCTCAGCCGCCGCACTCCTCCTCCAGATATCGCTT-TCGTGGATCACCGTTTATGTAATG 678
||||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||
Sbjct 799 TCTCAGCCGCCGCCCTCATCCTCCAGATATTG-TTGACGTGGATCACCGTTTATGTAATG 857
Query 679 GGCTTGGGCCTCATGGGTATAGCTTATGTTCTTACGATTTCTTGGTGGGTCATTGTTGGA 738
| | ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 858 GACATGGGCTTTATGGGCATAGCTTATGTTCTTACAATTTCTTGGTGGGTCATTGTTGGA 917
Query 739 GCCCAAACG-TCTTACATTATAGTTAG-CGTAAGGTTTAAG-GACACTTGGACTGGAGTT 795
||| | | | ||||||| ||||| | || |||| || |||| |||||||| ||
Sbjct 918 TCCC-AGTGTTTTTACATTGCGGTTAGTCCCAA-GTTT-AGACACACGTGGACTGGTCTT 974
Query 796 AGCTGGAAATCTCTCCATGGTCTTTGGAGCTTCTTTAAACTATCTGCTGGCTCTGCTGTA 855
||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 975 AGCTGGAGATCGCTCCAAGGTCTTTGGAGCTTCTTTAAACTCTCTGCTGGCTCAGCTGTT 1034
Query 856 ATGATCTGTTTGGAATTGTGGTATACACAGATTCTGGTTCTTCTCGCCGGTTTGCTC-AA 914
||||| ||| ||||| |||||||| | |||||||| |||||||| || ||||||||| ||
Sbjct 1035 ATGATTTGTCTGGAAATGTGGTATTCGCAGATTCTTGTTCTTCTTGCTGGTTTGCTCGAA 1094
Query 915 AGATCCTGCACTCTCTCTAGATTCTCTATCTATATGTATGTCAATTTCAGCATTATCATT 974
| ||||||| | ||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1095 A-ATCCTGCTCGCTCTCTAGATTCTCTTTCCATCTGTATGTCAATTTCAGCATTATCATT 1153
Query 975 CATGGTCTCCGTCGGCTTTAATGCAGCTGTAAGTGTGCGTACAAGTAATGAGCTTGGAGC 1034
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1154 CATGGTCTCTGTCGGCTTTAATGCTGCTGTAAGTGTACGGACAAGTAATGAGCTTGGAGC 1213
Query 1035 AGGAAATCCGAAATCCGTGTTGTTCTCTACATGGACGGCGACTTTTGTTTCCTTCGTGAT 1094
||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||
Sbjct 1214 AGGAAATCCGAAATCAGCATGGTTCTCTACATGGACGGCGACTTTTGTATCCTTCGTGAT 1273
Query 1095 CTCCGTCG-TGGAGGCACTTGTCGTGA-TTGCGTCACGTGATAACGTCAGCTACATTTTC 1152
|||||| | ||| || || | ||||| ||| || |||||| |||| ||||||||||||
Sbjct 1274 CTCCGT-GACGGAAGCCCTCGCCGTGATTTG-GTTTCGTGATTACGTTAGCTACATTTTC 1331
Query 1153 ACGTCA-GATGCTGACGTGGCTAAAGCCGTCTCTGATCTCTGTCCTTTTCTCGCCGTCAC 1211
||| | ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 1332 ACG-GAGGATGCTGACGTGGCTAAAGCCGTCTCTGACCTCTGTCCTTTTCTTGCCATCAC 1390
Query 1212 CATTATTCTTAACGGAATCCAACCTGTCTTGTCCGGAGTGGCAGTGGGATGTGGATGGCA 1271
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CATCATTCTCAACGGAATTCAACCTGTCTTGTCCGGAGTGGCAGTGGGATGTGGATGGCA 1450
Query 1272 AACATACGTGGCATATGTGAACGTTGGTTGTTACTATATTGTTGGTATTCCCATTGGATG 1331
||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||
Sbjct 1451 AACATACGTGGCATATGTGAATGTTGGTTGTTACTACGTTGTTGGTATTCCGGTTGGGTG 1510
Query 1332 TATTCTCGGCTTCACTTTCAATTTTCAAGCCAAGGGAATATGGACCGGGATGATTGGAGG 1391
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 TATTCTCGGCTTCACTTTCGATTTTCAAGCCAAGGGAATATGGACCGGGATGATTGGAGG 1570
Query 1392 TACCCTCATTCAAACACTCATCTTACTTTACGTCACATATCGAGCTGATTGGGATAAAGA 1451
||||||||| ||||||||||| |||||||||||||| || ||| | ||||||||||||||
Sbjct 1571 TACCCTCATGCAAACACTCATTTTACTTTACGTCACGTACCGAACAGATTGGGATAAAGA 1630
Query 1452 GGT 1454
|||
Sbjct 1631 GGT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5