BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354584
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21895.1 | Symbols: | DNA binding | chr4:11613314-11614941 ... 929 0.0
AT4G21880.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 183 2e-45
> AT4G21895.1 | Symbols: | DNA binding | chr4:11613314-11614941
REVERSE LENGTH=987
Length=987
Score = 929 bits (503), Expect = 0.0
Identities = 653/723 (90%), Gaps = 19/723 (3%)
Strand=Plus/Plus
Query 2 TGAACCAGCAGAATCAAGACACCATGAACTCACCTCCTTCTGCTGCTAATGATGGCTTGG 61
|||| |||||||||||||||| |||||||||||||||| || || |||||||||||||||
Sbjct 36 TGAATCAGCAGAATCAAGACATCATGAACTCACCTCCTCCTTCTTCTAATGATGGCTTGG 95
Query 62 CTAAGCGAAAAAGAGGCCGACCGCGCAAAGATGAAAACTCAACTCCAAAACCGGACACCA 121
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 96 CGAAGCGAAAAAGAGGTCGACCGCGCAAAGATGAAAACTCAACTCCAAAACCGGACATGA 155
Query 122 ATTTGGTAGGTAAGGTGGTTACTGGTGTAGTCGAAGGATCTTTCGACGCAGGCTATCTCC 181
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 156 ATTTGGTAGGTAAGGTGGTTACTGGTGTAATCGAAGGATCTTTCGACGCAGGCTATCTCC 215
Query 182 TTAATGTTAAGGTTAAAGACAGTGACACCAAACTCAGAGGTCTCGTGTTCATACCGGGCA 241
|||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 216 TTAACGTTAAGGTTAAAGACAGTGACACCCAACTCAGAGGTCTCGTGTTCATACGGGGCA 275
Query 242 GAGTCAATCCGATTACTCCAGAAAATGATGTGGCTCCTCTTGTTAAAATATACGAAAGAG 301
|||||| |||||| ||||||||||| || |||||||||||||||||||| |||| |||||
Sbjct 276 GAGTCACTCCGATCACTCCAGAAAACGACGTGGCTCCTCTTGTTAAAATGTACGGAAGAG 335
Query 302 AAGATATCAAGAACAACCAAGCTGATCATTCTTTCCCTACTGATCAACCAATGAAAGATG 361
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 336 AAGATATCAAGAACAACCAAACCGATCATTCTTTCCCTACTGATCAACCAATGCAAGATG 395
Query 362 CTGCTGTCACTACT---GACTTGGATATTTCTGAATCCACTCGAGCTTTGGTCCTAGTGC 418
|||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||| |
Sbjct 396 CTGCTGTCACTACTACTGACATGGATATTTCTGAATCCTCTCGAGCTTTGGTCGTAGTTC 455
Query 419 CACAAGCTAGCAATGGCCAACCGGAAG-AAGCTACGATGGA-GAAAGATGGAGTCATTGC 476
||||||| | |||||||||| || ||| ||||||||| ||| ||| |||||||||||||
Sbjct 456 CACAAGCGACCAATGGCCAAGCG-AAGGAAGCTACGAAGGATGAA-GATGGAGTCATTGA 513
Query 477 ACAACATGCTGACACTCGGTTAGTGGAGTTTTTTCCAACTCCAGGGACAATGATGATGAC 536
| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 514 AGGACAAGCTGACACTCGGTTAGTGGAGTTTTTTCCAACTCCAGGCACAATGATGATGAC 573
Query 537 GACTGCTCAACCGAATTTTGTCTTGGTACCGAAAGAGACAGAACAAGGGAAATCT-CTTG 595
||||||||| ||| ||||||||||||||||||||||||||||| |||| | || |
Sbjct 574 ---TGCTCAACCAAATCTTGTCTTGGTACCGAAAGAGACAGAACAACAGAAAACAACT-G 629
Query 596 GTGAAACTCGTGGATTCGATCTTATGGCCA-AGGAACCGGTTTGTCAAGGAGAGAAAGT- 653
||| | || ||||||||||||||||| | ||||||| ||| ||||||||||||| ||
Sbjct 630 GTGGGAGTCATGGATTCGATCTTATGGA-AGAGGAACCAGTTCGTCAAGGAGAGAA-GTT 687
Query 654 GCCAGAGCAGCT-T--CAGCTAGAGCTTGGAAACAAGACAACATTGAGTGGAGACAACAA 710
||||||| |||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 688 GCCAGAGGAGCTATTACATCTAGAGCTTGGAAACAAGACAACATTGAGTGTAGACAACAA 747
Query 711 CAT 713
|||
Sbjct 748 CAT 750
> AT4G21880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:11604986-11610651 FORWARD LENGTH=2702
Length=2702
Score = 183 bits (99), Expect = 2e-45
Identities = 111/117 (95%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 994 ACCAAATTAAACTCAAGAATCTGCTCAATGGCATGTAACAATGAGTGCAAGATGTTCGCC 1053
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1510 ACCAAATTAAACTCAAGAATCTGCTCAATGGCCTGTAACAATGAGTGCAGGATGTTTGCT 1451
Query 1054 GATATTACCAGACCTGCTTCACACATATTTTCAACTACATCAAGAGCAGTGGCCACC 1110
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1450 GATATTACCAGACCTGCTTCACACATATTTTCAACTATATCAAGAGCAGTGACCACC 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5