BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354592

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21850.1 | Symbols: ATMSRB9, MSRB9 | methionine sulfoxide re...   726    0.0  


> AT4G21850.1 | Symbols: ATMSRB9, MSRB9 | methionine sulfoxide 
reductase B9 | chr4:11591116-11592238 REVERSE LENGTH=794
Length=794

 Score =  726 bits (393),  Expect = 0.0
 Identities = 419/432 (97%), Gaps = 0/432 (0%)
 Strand=Plus/Plus

Query  1    ATGCCAACACCAGCAACATCAGTGGCTCCATCAACTGGATCTGTCCAGAAAAAAGATCAA  60
            ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  101  ATGCCAACATCAGCAACAGCGGTGGCTCCATCAACTGGATCTGTCCAGAAAAAAGATCAA  160

Query  61   GACTGGCGTGCGATTTTGTCTCCTGAGCAATTCAGAGTTCTCAGGGAAAAGGGCACAGAA  120
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| 
Sbjct  161  GACTGGCGTGCGATTTTGTCTCCCGAGCAATTTAGAGTTCTCAGGGAAAAGGGCACAGAG  220

Query  121  AACCGAGGTAAAGGAGAGTATACCAAACTGTTCGACGACGGAATCTATAGTTGTGCTGGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  AACCGAGGTAAAGGAGAGTATACCAAACTGTTCGACGACGGAATCTATAGTTGTGCTGGT  280

Query  181  TGTGCAACTCCTCTTTATAAGTCCACCACTAAGTTCGACTCTGGCTGTGGATGGCCTTCC  240
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  281  TGTGCAACTCCTCTTTATAAGTCCACCACTAAGTTCGACTCTGGTTGTGGCTGGCCTTCC  340

Query  241  TTCTTCGATGCTATCCCTGGTGCCATTAAACAAACGCCCGAGGCAGGAGGGAGAAGAATG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  TTCTTCGATGCTATCCCTGGTGCCATTAAACAAACGCCCGAGGCAGGAGGGAGAAGAATG  400

Query  301  GAGATCACGTGCGCAGCATGTGATGGACATTTAGGTCATGTTGTCAAAGGAGAAGGTTTT  360
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  401  GAGATCACGTGCGCGGCATGTGACGGACATTTAGGTCATGTTGTCAAAGGAGAAGGTTTT  460

Query  361  CCCACAGCGACCGATGAGCGTCACTGCGTCAACAGTGTTTCTCTCAAGTTCTCCGAAATT  420
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  461  CCCACAGCGACCGATGAGCGCCACTGCGTCAACAGTGTTTCTCTCAAGTTCTCTGAAATT  520

Query  421  TCTTCCCAATAA  432
            || |||||||||
Sbjct  521  TCCTCCCAATAA  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5