BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354595
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide re... 699 0.0
AT4G21840.1 | Symbols: ATMSRB8, MSRB8 | methionine sulfoxide re... 660 0.0
AT4G04830.1 | Symbols: ATMSRB5, MSRB5 | methionine sulfoxide re... 231 3e-60
> AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide
reductase B7 | chr4:11584346-11585419 REVERSE LENGTH=817
Length=817
Score = 699 bits (378), Expect = 0.0
Identities = 411/427 (96%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 1 ATGACCACGGCAGCAATTCCAGCAACTAGATCTTTCCAGAAACAAGAAGAGGAGTGGCGT 60
|||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 173 ATGACCGCGGCAGCAGTTCCAGCAACTGGATCTTTCCAGAAACAAGACGAGGAGTGGCGT 232
Query 61 GCGGTTCTTTCTCCTGAGCAGTTTAGGGTTCTCAGATTAAAAGGCACAGATAAACGAGGC 120
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 233 GCGGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGCACAGATAAACGAGGC 292
Query 121 AAAGGAGAGTATACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AAAGGAGAGTTTACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACT 352
Query 181 GCTCTTTATAAATCAACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGAC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGAC 412
Query 241 GCCATCCCCGGTGTTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACA 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACA 472
Query 301 TGTGCAGTGTGTGATGGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTACTCTACTCCT 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 473 TGTGCAGTGTGTGATGGACATTTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCA 532
Query 361 ACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATT-TGCTTCTACTAATTCCTC 419
||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||
Sbjct 533 ACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCT-CTTCTGCTGGTTCCTC 591
Query 420 CCAATAA 426
|||||||
Sbjct 592 CCAATAA 598
> AT4G21840.1 | Symbols: ATMSRB8, MSRB8 | methionine sulfoxide
reductase B8 | chr4:11587049-11588272 REVERSE LENGTH=708
Length=708
Score = 660 bits (357), Expect = 0.0
Identities = 403/426 (95%), Gaps = 0/426 (0%)
Strand=Plus/Plus
Query 1 ATGACCACGGCAGCAATTCCAGCAACTAGATCTTTCCAGAAACAAGAAGAGGAGTGGCGT 60
|||||| |||| ||| ||||| ||| | ||||||||||||||||||| || |||||||||
Sbjct 101 ATGACCGCGGCTGCAGTTCCATCAAGTGGATCTTTCCAGAAACAAGACGAAGAGTGGCGT 160
Query 61 GCGGTTCTTTCTCCTGAGCAGTTTAGGGTTCTCAGATTAAAAGGCACAGATAAACGAGGC 120
|| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 161 GCTGTTCTGTCTCCTGAGCAGTTTAGGGTTCTCAGACTAAAAGGAACAGATAAACGAGGC 220
Query 121 AAAGGAGAGTATACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AAAGGAGAGTTTACAAAGAAGTTCGAGGAAGGGACTTATAGTTGTGCTGGTTGTGGAACT 280
Query 181 GCTCTTTATAAATCAACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGAC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GCTCTTTATAAATCGACCACTAAGTTCGACTCCGGTTGCGGTTGGCCTGCGTTCTTCGAC 340
Query 241 GCCATCCCCGGTGTTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACA 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GCCATCCCCGGTGCTATTAAACAAACTCCAGAAGCAGGTGGAAGAAGAATGGAGATAACA 400
Query 301 TGTGCAGTGTGTGATGGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTACTCTACTCCT 360
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 401 TGTGCAGTGTGTGATGGACATCTAGGCCATGTTTTCAAAGGCGAAGGTTACTCTACTCCA 460
Query 361 ACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATTTGCTTCTACTAATTCCTCC 420
||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||
Sbjct 461 ACCGATCAACGTCACTGCGTTAACAGTGTCTCTCTCAAATTCGCTTCTGCTGATTCTTCC 520
Query 421 CAATAA 426
|||||
Sbjct 521 AAATAA 526
> AT4G04830.1 | Symbols: ATMSRB5, MSRB5 | methionine sulfoxide
reductase B5 | chr4:2445859-2447086 FORWARD LENGTH=677
Length=677
Score = 231 bits (125), Expect = 3e-60
Identities = 289/365 (79%), Gaps = 24/365 (7%)
Strand=Plus/Plus
Query 37 CAG-AAACAAGAAGAGGAGTGGCGTGCGGTTCTTTCTCCTGAGCAGTTTAGGGTTC-TCA 94
||| |||| ||| |||||||||||||||||||||||||| ||||||||| | ||| ||
Sbjct 68 CAGAAAAC-AGAGGAGGAGTGGCGTGCGGTTCTTTCTCCGGAGCAGTTTCGTATTCTTC- 125
Query 95 GAT-TAAAAGGCACAGATAAA-CGAGGCAA-AGGAGAGTAT-ACAAAGAAGTTCGAGGAA 150
| | ||||||||| || ||| | ||| || ||||| ||| || ||| |||||||||
Sbjct 126 G-TCAAAAAGGCACTGA-AAAGCCAGG-AACTGGAGAATATGAC-AAGTTTTTCGAGGAA 181
Query 151 GGGA-CTTATAGTTGTGCT-GGTTGTGGA-ACTGCTCTTTATAAATCAACCACTAAGTTC 207
|| | ||| | ||| | | || || | ||| ||||||||||||||||||| ||||||
Sbjct 182 GGAATCTTCGA-TTGCG-TAGGATG-CAAGACTCCTCTTTATAAATCAACCACGAAGTTC 238
Query 208 GACTCCGGTTGCGGTTGGCCTGCGTTCTTCG-ACGCCATCCCCGGTGTTATTAAA-CAAA 265
|| ||||| || || ||||| || ||||| | | | | |||| |||| | |||| | ||
Sbjct 239 GATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGAC-TCCCTGGTGCCA-TAAACCGAA 296
Query 266 CTCCAGAAGCAGGTGGAAGAAGAA-TGGAGATAACATGTGCAGTGTGTGATGGACATTTA 324
| || || ||| ||| ||||||| | ||||| || ||||| | ||| ||||||||||||
Sbjct 297 CCCCTGATCCAGATGGGAGAAGAACT-GAGATCACTTGTGCTGCGTGCGATGGACATTTA 355
Query 325 GGCCATGTTTTCAAAGGAGAAGGTTACTCTACTCCTACCGATCAACGTCACTGCGTTAAC 384
||||||||||||||||||||||||||| || ||| |||||| ||||||| |||||||||
Sbjct 356 GGCCATGTTTTCAAAGGAGAAGGTTACGGTAATCCAACCGATGAACGTCATTGCGTTAAC 415
Query 385 AGTGT 389
|||||
Sbjct 416 AGTGT 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5