BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354612
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21690.1 | Symbols: ATGA3OX3, GA3OX3 | gibberellin 3-oxidase... 1714 0.0
> AT4G21690.1 | Symbols: ATGA3OX3, GA3OX3 | gibberellin 3-oxidase
3 | chr4:11527229-11529060 FORWARD LENGTH=1050
Length=1050
Score = 1714 bits (928), Expect = 0.0
Identities = 1010/1050 (96%), Gaps = 3/1050 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCCGTCTCACAGCTATTCAAGAACAACCCCGTGAACCGTGACCGGATCATCCCA 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCTCTGTCACACAGCTATTCAAGAACAACCCCGTGAACCGTGACCGGATCATCCCA 60
Query 61 CTAGATTTCACCAACACCAAAACCCTACCCGACTCTCACGTTTGGTCCAAACCCGAACCC 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 CTAGATTTCACCAACACCAAAACCCTACCCGACTCCCACGTCTGGTCCAAACCCGAACCC 120
Query 121 GAAACCACGACCCGACCCATTCCCGTCATCAGCTTGTCTAACCC---GGAACATGGGCTA 177
|||||||||| | ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 GAAACCACGAGCGGACCCATTCCCGTCATCAGCTTGTCCAACCCGGAGGAACATGGGCTA 180
Query 178 CTCCGACAAGCCTGTGAGGAATGGGGTGTGTTTCATATCACAGACCATGGGGTCTCACAC 237
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTACGACAAGCCTGTGAGGAATGGGGTGTGTTTCATATCACAGACCATGGAGTCTCACAC 240
Query 238 TCGTTACTCCATAACGTTGAGTGCCAAATGAAGAGGCTTTTCTCTTTACCCATGCATCGT 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTTACTCCATAACGTTGATTGCCAAATGAAGAGGCTTTTCTCTTTACCCATGCATCGT 300
Query 298 AAGATCCTAGCCGTCCGATCTCCCGACGAGTCCACTGGTTACGGTGTGGTTCGGATCTCC 357
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATCTTAGCCGTTCGATCTCCCGACGAGTCCACTGGTTACGGTGTGGTTCGGATCTCC 360
Query 358 ATGTTCTATGATAAGCTCATGTGGTCTGAAGGATTCTCCGTCATGGGTTCCTCTCTTCGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGTTCTATGATAAGCTCATGTGGTCTGAAGGATTCTCCGTCATGGGTTCCTCTCTTCGA 420
Query 418 CGTCACGCTACACTATTATGGCCGGACGATCACGCCGAGTTCTGCAATGTAATGGAAGAG 477
|||||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 421 CGTCACGCTACACTCTTATGGCCCGATGATCATGCCGAGTTCTGCAATGTGATGGAAGAG 480
Query 478 TATCAGAAGGCAATGGATGATTTGAGTCATAGACTAATAAGCATGTTGATGGGCTCGTTA 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCAGAAGGCAATGGATGATTTAAGTCATAGACTAATAAGCATGTTGATGGGCTCGTTA 540
Query 538 AGGCTAACACGTGAAGATTTGGGATGGCTTGTACCGGACAAAACTGGTTCAGGAACCGAC 597
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 GGGCTAACACATGAAGATTTGGGATGGCTTGTACCAGACAAAACTGGTTCAGGAACTGAC 600
Query 598 TCCATCCAATCCTTTCTGCAGTTGAACTCCTACCCGGTTTGCCCTGACCCTCATCTAGCC 657
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGATCCAATCCTTTCTGCAGTTGAACTCCTACCCGGTTTGCCCTGACCCTCATCTAGCT 660
Query 658 ATGGGCTTAGCCCCTCACACCGACTCCTCCCTACTCACCATTCTCTACCAAGGCAATATT 717
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 ATGGGTTTAGCCCCTCACACCGACTCCTCCCTACTTACCATTCTCTACCAAGGCAATATT 720
Query 718 CCAGGTCTAGAGATTGAAAGTCCACAAGAAGAAGGGTCGAGATGGATTGGAGTAGAGCCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCAGGTCTAGAGATTGAAAGTCCACAAGAAGAAGGGTCGAGATGGATTGGAGTAGAGCCA 780
Query 778 ATAGAAGGTAGTCTCGTTGTTATAATGGGAGATTTATCTCATATCATATCTAATGGACAG 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATAGAAGGTAGTCTCGTTGTTATAATGGGAGATTTATCTCATATCATATCCAATGGACAG 840
Query 838 TTCAGAAGCACGATGCACCGTGCGGTGGTGAACAAGACGCACCACCGTGTCTCAGCCGCT 897
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTCAGAAGTACAATGCACCGTGCGGTGGTGAACAAGACGCACCACCGTGTCTCAGCCGCT 900
Query 898 TATTTCGCCGGCCCACCCAAGAACCTTCAAATTGGACCATTGACCAGCGACAAGAACCAT 957
|||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 901 TATTTCGCTGGCCCTCCCAAGAACCTTCAGATCGGACCGTTGACCAGCGACAAGAACCAT 960
Query 958 CCTCCTATTTACCGTCGTTTGATATGGGAAGAGTACCTTGCAGCCAAAGCAACACACTTT 1017
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCTCCTATTTACAGGCGTTTGATATGGGAAGAGTACCTTGCAGCCAAAGCAACACACTTT 1020
Query 1018 AACAAAGCCTTGAATTTGTTCCGTTGCTGA 1047
||||||||||||| ||||||||||||||||
Sbjct 1021 AACAAAGCCTTGACTTTGTTCCGTTGCTGA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5