BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354635
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21480.1 | Symbols: STP12 | sugar transporter protein 12 | c... 2477 0.0
AT5G23270.1 | Symbols: STP11, ATSTP11 | sugar transporter 11 | ... 93.5 5e-18
> AT4G21480.1 | Symbols: STP12 | sugar transporter protein 12 |
chr4:11433303-11435284 REVERSE LENGTH=1526
Length=1526
Score = 2477 bits (1341), Expect = 0.0
Identities = 1450/1502 (97%), Gaps = 9/1502 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCAGTCGGAATTGTCGTCGGAGATGGCAAAAAAGAATATCCTGGTAAACTCACT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTCAGTCGGAATTGTCATCGGAGATGGCAAAAAAGAATATCCTGGTAAACTCACT 60
Query 61 CTTTACGTCACCGTGACATGTATCGTCGCCGCCATGGGTGGTCTCATCTTCGGTTACGAC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTACGTCACCGTGACATGTATTGTCGCCGCCATGGGTGGTCTCATCTTCGGTTACGAC 120
Query 121 ATCGGTATCTCCGGTGGAGTGACGACAATGGATTCGTTTCAGCAAAAGTTCTTCCCGTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGGTATCTCCGGTGGAGTGACGACAATGGATTCGTTTCAGCAAAAGTTCTTCCCGTCG 180
Query 181 GTTTACGAGAAACAGAAGAAGGATCACGTAT-CAAACCAATACTGCAGATTTGACAGCGT 239
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 181 GTTTACGAGAAACAGAAGAAGGATCATG-ATTCAAACCAATACTGCAGATTTGACAGCGT 239
Query 240 TTCTCTCACTCTCTTCACTTCCTCTCTTTACCTCGCCGCACTCTGCTCCTCCATCGTTGC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 TTCTCTCACTCTCTTCACTTCCTCTCTTTACCTCGCCGCACTCTGCTCCTCCCTCGTTGC 299
Query 300 CTCTTACGTTACCCGTAAGTTTGGCCGGAAAATTTCGATGCTTCTCGGCGGAGTTCTCTT 359
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 CTCTTACGTTACCCGTCAGTTTGGCCGGAAAATTTCGATGCTTCTCGGTGGAGTTCTCTT 359
Query 360 CTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCG 419
Query 420 TTTGTTACTCGGTTTTGGTATCGGCTTCACCAATCAGTCTGTGCCGTTGTATCTCTCGGA 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGTTACTCGGTTTCGGTATCGGCTTCACCAATCAGTCTGTGCCGTTGTATCTCTCGGA 479
Query 480 GATGGCACCGTATAAATTCAGAGGAGCATTGAACATCGGATTCCAGCTCTCAATCACCAT 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGGCACCGTATAAATACAGAGGAGCATTGAACATCGGATTCCAGCTCTCAATCACCAT 539
Query 540 TGGTATCCTTATCGCCAACGTTTTGAACTTCTTCTTCTCCAAAATCAGCAGATGGGGTTG 599
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGGTATCCTTGTCGCCAACGTTTTGAACTTCTTCTTCTCCAAAATCAGT---TGGGGTTG 596
Query 600 GAGACTCAGTCTCGGCGGCGCCGTCGTCCCGGCACTCATCATCACCGTTGGTTCTCTTAT 659
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 597 GAGACTCAGTCTCGGCGGCGCCGTCGTTCCGGCACTCATCATCACCGTCGGTTCTCTTAT 656
Query 660 CCTCCCGGACACACCAAACTCCATGATCGAGAGAGGTCAATTTAAGCTAGCGGAAACGAA 719
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 657 CCTCCCGGACACACCAAACTCCATGATCGAGAGAGGTCAATTTAGGCTAGCGGAAGCGAA 716
Query 720 ACTCCGTAAGATTCGTGGCGTCGACGACGTTGATGACGAGATCAACGATTTGATCGTCGC 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 717 ACTCCGTAAGATTCGTGGCGTCGACGACATTGATGACGAGATCAACGATTTGATCATCGC 776
Query 780 CAGTGAAGCTTCGAAGCTCGTTGAGCATCCATGGAGGAATCTGTTGCAGAGGAAGTATAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGTGAAGCTTCGAAGCTCGTTGAGCATCCATGGAGGAATCTGTTGCAGAGGAAGTATAG 836
Query 840 ACCACATCTAACGATGGCGATTCTGATTCCGGCGTTTCAGCAGCTCACCGGAATCAATGT 899
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 837 ACCACATCTAACGATGGCGATTCTGATTCCGGCATTTCAGCAGCTTACCGGAATCAATGT 896
Query 900 TATAATGTTCTACGCGCCGGTTCTGTTTCAAACGATTGGATTCGGTAGCGACGCCGCTCT 959
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 897 TATAATGTTCTACGCGCCGGTTCTGTTTCAAACGATTGGATTTGGTAGCGACGCGGCTCT 956
Query 960 GATTTCGGCGGTTGTGACCGGTTTGGTTAACGTTGGAGCCACCGTGGTGTCAATCTATGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GATTTCGGCGGTTGTGACCGGTTTGGTTAACGTTGGAGCCACCGTGGTGTCAATCTATGG 1016
Query 1020 CGTTGATAAATGGGGAAGACGATTTCTCTTCCTTGAAGGAGGATTCCAAATGCTAATATC 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1017 CGTTGATAAATGGGGAAGACGATTTCTATTCCTTGAAGGAGGATTCCAAATGCTAATTTC 1076
Query 1080 TCAGGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGCGTCGATGGAAACCCC-GGCG 1138
||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||
Sbjct 1077 TCAGGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAA-CCCCAGGCG 1135
Query 1139 TTTTACCAAAATGGTACGCCATTGTTGTAGTTTTGTTCATATGCATCTACGTGGCGGCCT 1198
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1136 TTTTACCAAAATGGTACGCCATTGTTGTGGTTTTGTTCATATGCATCTACGTGGCGGCGT 1195
Query 1199 TTGCTTGGTCGTGGGGTCCACTTGGATGGTTAGTGCCATCGGAGATTTTCCCGTTGGAAA 1258
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1196 TTGCTTGGTCGTGGGGTCCACTAGGATGGTTAGTGCCATCGGAGATTTTTCCGTTGGAAA 1255
Query 1259 TCCGATCGGCGGCTCAGAGCATAACGGTGTCGATGAACATGATCTTCACGTTCCTGATTG 1318
||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1256 TCCGATCAGCGGCTCAGAGCATAACGGTGTCGGTGAACATGATCTTCACGTTCTTGATTG 1315
Query 1319 CTCAGGTGTTTCTGATGATGCTCTGCCACTTGAAGTTCGGATTGTTCATATTCTTCGCGT 1378
| || |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1316 CACAAGTGTTTTTGATGATGCTTTGCCACTTGAAGTTCGGGTTGTTCATATTCTTCGCGT 1375
Query 1379 TTTTCATGGTGGTGATGTCGATTTTCGTCTA-CTTTTTCTTACCGGAGACAAGAGGAGTA 1437
||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1376 TTTTCGTGGTGGTGATGTCGATTTTCGTCTATCTTTT-CTTACCGGAGACAAGAGGAGTG 1434
Query 1438 CCGATTGAGGAGATGAAGCAGGTCTGGAGATCGCATTGGTATTGGTCAAAGTTCGTTGCC 1497
||||| ||||||||||| | |||||||||||| |||||||||||||| |||||||||| |
Sbjct 1435 CCGATCGAGGAGATGAATCGGGTCTGGAGATCACATTGGTATTGGTCGAAGTTCGTTGAC 1494
Query 1498 GC 1499
||
Sbjct 1495 GC 1496
> AT5G23270.1 | Symbols: STP11, ATSTP11 | sugar transporter 11
| chr5:7838906-7841026 FORWARD LENGTH=1923
Length=1923
Score = 93.5 bits (50), Expect = 5e-18
Identities = 344/480 (72%), Gaps = 44/480 (9%)
Strand=Plus/Plus
Query 94 ATGGGTGGTCTCATCTTCGGTTACGACATCGGTATCTCCGGTGGAGTGACGA-CAATGGA 152
|||||||||||| |||| ||||||||||| |||||||| || ||||||| | |||||||
Sbjct 323 ATGGGTGGTCTCCTCTTTGGTTACGACATTGGTATCTCAGGAGGAGTGA-TATCAATGGA 381
Query 153 -TTCGTTTC-AGCAAAAGTTCTTCCC-GTCG-GTTTACGAGAAA--CAGAA-GAAGGATC 205
| |||| | | ||| |||||||| | || | || || ||| || || || ||
Sbjct 382 GGAC-TTTCTAACGAAA-TTCTTCCCTGACGTGCTT-CGTCAAATGCAAAACAAAAGAGG 438
Query 206 ACGTATCAAAC-CAATACTGCAGATTTGAC-A-GCGTTTCTCTCACTCTCTTCACTTCCT 262
|| | |||| |||| || | || |||| | | | |||| | ||||||||||||||||
Sbjct 439 GCG--TGAAACAGAATATTGTAAATATGACAATGAGCTTCT-T-ACTCTCTTCACTTCCT 494
Query 263 CTCTTTACCTCGCCGCACTCTGCTC-CTCCAT-CGTTGCCTCTTACG-TTACCCGTAAGT 319
||||||||||||| || | || || || | | | ||||||| || |||| | |
Sbjct 495 CTCTTTACCTCGCTGCT-T-TGTTCGCTTCTTTCCTTGCCTCC-ACCATTACAAGGCTTT 551
Query 320 TTGGCCGGAAAATTTCGATGCTTCTCGGCGGAGT-TCTCTTCTGCGC-C-GGAGCTCTTC 376
|||||||||| | || ||| || |||| | | || ||| | | | | ||||||||||
Sbjct 552 TTGGCCGGAAGGTCTCAATGGTTATCGG-GTC-TCTCGCTTTT-CTCTCTGGAGCTCTTC 608
Query 377 TTAACGGTTTCGCAA-CTGCCGTTTG-GATGCTCATCGTTGGTCGTTTGTTACTCGGTTT 434
| |||||||| || | | || | | |||| | ||| | || || || || |||||| |
Sbjct 609 TCAACGGTTTAGCTATCAACC-TC-GAGATGTTGATCATCGGGCGGTTATTTCTCGGTGT 666
Query 435 TGGTATCGGCTTCACCAATCAGTCTGTGCCG-TTGTATCTCTCGGAGATGGCACC-GTAT 492
||| |||| ||| | || || ||||| || || || ||||| |||||||| || | |
Sbjct 667 AGGTGTCGGATTCGCTAACCAATCTGTTCCTCTT-TACCTCTCTGAGATGGCTCCTGC-T 724
Query 493 AA-ATTCAGAGGAGCAT-TGAACATCGGATTCCAGCTCTCAATCACCATTGGTATCCTTA 550
|| || ||||||||| | | ||||| || || || | ||||||| || || ||| |||
Sbjct 725 AAGAT-CAGAGGAGC-TCTCAACATTGGTTTTCAATTAGCAATCACGATCGGGATC-TTA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5