BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354651
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA... 1033 0.0
> AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:11349922-11350694 FORWARD
LENGTH=624
Length=624
Score = 1033 bits (559), Expect = 0.0
Identities = 605/627 (96%), Gaps = 3/627 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGGAGGAAGCAGATTTCAAGAACCAGTGAGGATGAGCCGTAGGAAACAAGTAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGGAGGAAGCAGATTTCAAGAACCAGTGAGGATGAGCCGTAGGAAACAAGTAACA 60
Query 61 AAAGAGAAGGAAGAAGATGAAAACTTCAAATCTCCAAATCTTGAAGCAGAGAGACGTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAGAAGGAAGAAGATGAAAACTTCAAATCTCCAAATCTTGAAGCAGAGAGACGTAGA 120
Query 121 AGAGAGAAGCTTCATGGTCGGCTTATGGCTCTGCGATCTCATGTCCCAATTGTCACCAAC 180
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AGAGAGAAGCTTCATTGTCGGCTTATGGCTCTGCGATCTCATGTCCCCATTGTCACCAAC 180
Query 181 ATGACTAAAGCAAGTATTGTTGAAGATGCGATTACTTACATAGGAGAGCTTCAGAATAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 ATGACTAAAGCAAGTATTGTTGAAGATGCGATTACTTACATAGGAGAGCTTCAAAACAAT 240
Query 241 GTTAAGAATCTCTTAGAGACATTTCATGAAATGGAAGAAGCTCCTCCTGAGACTGATGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GTTAAGAATCTCTTAGAGACATTTCATGAAATGGAAGAAGCTCCTCCTGAGATTGATGAA 300
Query 301 GAACAAACAGATCAAATGATTAAACCTGAAGTTGAAACTAGTGATCTTAAAGAAGAGATA 360
|||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GAACAAACGGATCCAATGATAAAACCTGAAGTTGAAACTAGTGATCTTAACGAAGAGATG 360
Query 361 AAGAAACTCGGAATCGAGGAGAATGTGCAATTGTGTAAGATTGGGGAGAGCAAGTTTTGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 AAGAAACTCGGAATCGAGGAGAATGTGCAATTGTGTAAGATTGGGGAGAGGAAGTTTTGG 420
Query 421 TTAAAGATCATAACAGAGAAGAAAGCTGGGATCTTTACAAAATTCATGGAGGTTATGAGA 480
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 421 TTAAAGATCATAACAGAGAAGAGAGATGGGATCTTTACTAAATTCATGGAGGTTATGAGA 480
Query 481 TTTCTCGGATTCGAGATTATCGACATTAGTCTAACAACTTCAAATGGAGCCATTCTTATT 540
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 481 TTTCTCGGATTCGAGATTATCGATATTAGTCTAACAACTTCAAATGGAGCAATTCTTATT 540
Query 541 TGTTCCTCTGTTCAGATACATCAGGAACTCTGTGATGTTGAACAGACAAAAGATTTTCTT 600
|| |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTGCCTCTGTTCAGA--CA-CAGGAACTCTGTGATGTTGAACAGACAAAAGATTTTCTT 597
Query 601 TTGGAAGTTATGAGAAGCAATCCGTAA 627
||||||||||||||||||||||| |||
Sbjct 598 TTGGAAGTTATGAGAAGCAATCCATAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5