BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354696
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20860.1 | Symbols: | FAD-binding Berberine family protein ... 2470 0.0
> AT4G20860.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11172622-11174467 FORWARD LENGTH=1846
Length=1846
Score = 2470 bits (1337), Expect = 0.0
Identities = 1482/1554 (95%), Gaps = 2/1554 (0%)
Strand=Plus/Plus
Query 92 TTCAATGTGTCAAATCTGTTTATTCTACTCCCACAAGAGAACAATTCCAAAATTGCTTGT 151
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 145 TTCTATGTGTCAAATCTGTTTATTCTACTCCGACAAGAGAACAATTCCAAAATTGCTTGT 204
Query 152 CCACAAAACAATTCAATTCAACCTTCCAAAACCCTATAAATCTCACCACTCATAAACCAG 211
||||||||||||||||||| ||| || ||||||||||||||||||||||||||| || ||
Sbjct 205 CCACAAAACAATTCAATTCTACCCTCAAAAACCCTATAAATCTCACCACTCATACACTAG 264
Query 212 ATTCCCGAG-TCTACACCGACTTTTCCGAATCTTCATCTCCAAATTCTACTTTCCTCAAC 270
||||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 265 ATTCCCGAGTTC-ACACCGACTTTTCCGAGTCTTCATCTCCAAATTCTAGTTTCCTCAAC 323
Query 271 TTGAATTTCACCAGTTTGAAGCCGATTCTGATCGTAAAACCGAAATCCGAATCCGAAATC 330
||||||||||| || |||||||||||||| ||||| || || |||||||||||||||||
Sbjct 324 TTGAATTTCACAAGCTTGAAGCCGATTCTCATCGTTAAGCCAAAATCCGAATCCGAAATA 383
Query 331 AAACAATCAATTCTATGCAGCAGGAAACTTGGAGTACAAGTAAGAACCATGAGTGGTGGT 390
|||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 384 AAACAATCGATTTTATGCAGCAGGAAACTTGGAGTGCAAGTAAGAACAATGAGTGGTGGT 443
Query 391 CATGACTACGAAGGTCTATCTTACCTCTCACAATCACCATTCATAATCGTTGACCTCGTT 450
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 444 CATGACTACGAAGGTCTATCTTACCTCTCACTATCACCTTTCATAATCGTCGACCTCGTT 503
Query 451 AACCTCAGATCGATCAACCTCAACCTCACAGACGACAACGCTTGGATCCAATCGGGCGCA 510
||||||||||| |||| | |||||||||||||||| | ||||||||||||||||||||||
Sbjct 504 AACCTCAGATCAATCAGCATCAACCTCACAGACGAGACCGCTTGGATCCAATCGGGCGCA 563
Query 511 ACACTCGGCGAACTCTATTACAAAATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 570
|||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 564 ACACTCGGCGAAGTCTACTACAAGATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 623
Query 571 GGGATATGTCCAAGTGTTGGTGTTGGCGGGCATATTAGCGGTGGAGGATTCGGTACAATA 630
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 624 GGGATATGTCCAAGTGTTGGTGTTGGTGGACATATTAGCGGAGGAGGATTCGGTACAATA 683
Query 631 ATGAGGAAACACGGTTTAGCGTCTGATAACGTTGTAGACGCGCGTTTGATGGACGTAAAT 690
||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 684 ATGAGGAAATACGGTTTAGCGTCTGATAACGTTGTGGACGCACGTTTGATGGATGTAAAT 743
Query 691 GGGAAAATTCTTGACCGGAAAACGATGGGGGAGGATTTGTTTTGGGCGCTAAGAGGCGGT 750
||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 744 GGGAAAACTCTTGACCGGAAAACGATGGGAGAGGATTTGTTTTGGGCGCTTAGAGGCGGT 803
Query 751 GGAGCTGCAAGTTTTGGCGTTGTCTTGTCATGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 810
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 804 GGAGCTGCGAGTTTTGGCGTTGTCTTGTCGTGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 863
Query 811 AAGGTTACTTGTTTCATAAGTCAACATACGATGGGACCGAGCATGAACAAGCTTGTTCAT 870
||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 864 AAGGTAACTTGTTTCATAAGTCAACATCCGATGGGACCTAGCATGAACAAGCTTGTTCAT 923
Query 871 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTTATTATTGAT 930
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 924 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTCATTATTGAC 983
Query 931 AACAGTCTAGAAGGGAATCAAAGAAGAGTGAAATCTACATTTCAAACTCTTTTTCTTGGT 990
||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 984 AACAGTCTAGAAGGGAATCAAAGAAAAGTGAAATCAACATTTCAAACTCTATTTCTTGGT 1043
Query 991 GGAATCGATAGATTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGTTTACGATCT 1050
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1044 GGAATCGATAGACTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGCTTACGATCT 1103
Query 1051 CAAGACTGCTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1110
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CAAGACTGTTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1163
Query 1111 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAAGATCAGTATTTCAAAGCA 1170
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1164 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAGGATCAGTATTTCAAAGCA 1223
Query 1171 AAATCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1230
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AAGTCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1283
Query 1231 TTTCTCGAGCAAGATACTCCATTGATGATCTTCGAGCCATTGGGTGGGAAAATCAGCAAG 1290
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1284 TTTCTCGAGCAAGATACTCCACTGATGATCTTTGAGCCATTGGGTGGGAAAATCAGCAAG 1343
Query 1291 ATTTCAGAAACAGAGTCTCCATATCCACACAGGAGAGGGAATCTGTATAATATACAGTAC 1350
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1344 ATTTCAGAAACAGAATCTCCATATCCACACAGAAGAGGTAATCTGTATAATATACAGTAC 1403
Query 1351 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTTAGGTGGATGAGA 1410
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1404 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTCAGGTGGATGAGA 1463
Query 1411 TCGCTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1470
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TCGTTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1523
Query 1471 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATCAACACAAGTTTCGAAGATGCGAGG 1530
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1524 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATTAACACGAGTTTCGAAGATGCAAGG 1583
Query 1531 AAATGGGGTGAGACATATTTCAAAGGTAACTTCAAGAGATTGGGTTTGGTTAAAGGGAAG 1590
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1584 AAATGGGGTGAGACTTATTTCAAAGGTAATTTCAAGAGATTAGGTTTGGTTAAAGGGAAG 1643
Query 1591 ATTGATCCCACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1644
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 ATTGATCCAACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5