BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354739
Length=3405
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20060.1 | Symbols: EMB1895 | ARM repeat superfamily protein... 5022 0.0
> AT4G20060.1 | Symbols: EMB1895 | ARM repeat superfamily protein
| chr4:10854790-10859330 REVERSE LENGTH=3405
Length=3405
Score = 5022 bits (2719), Expect = 0.0
Identities = 3187/3415 (93%), Gaps = 24/3415 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCATCAAGCTCGAGAAATCTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCATCAAGCTCGAGAAATCTCTT 60
Query 61 CGTTCTAAAAACCCAGTTAAAGCTGTTGAAGCTATCTTAGAGACTGGTGAGAAGCTTGAA 120
|||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGTTCTAAAAACTCAGTTAAAGCCGTTGAAGCTATCTTAGAGACTGGTGGGAAGCTTGAA 120
Query 121 CAGTGGAGCAAAGAACAAGAATCTGCAATTGCTGTTTACAATTTATTTGGTTTGGTTCCT 180
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGGAGTAAAGAACCAGAATCTGCTATTGCTGTTTACAATTTATTTGGTTTGGTTCCT 180
Query 181 GAAGAAGATAAGCTCTTTTCAAATACTATCTTGTTGAGGCTAGTTGACGCGTTTTGTGTT 240
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 181 GAAGAAGATAAGCTCTTTTCAAATACTATCCTGTTGAGGCTTGTTGACGCGTTTTGTGTT 240
Query 241 GGGGATAAGCTTGTTAAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTCAAGCTAAGC 300
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGGGATAAGCTTATTAAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTTAAGCTAAGC 300
Query 301 CGAGGGAATAACGTAAATGAGTCTGC-AGCTTGGTTTTTGTCAAAGGCTAGGGTGCATAA 359
|||||||| ||||||||||| || || || ||||||||||||||||| ||||||||||||
Sbjct 301 CGAGGGAAGAACGTAAATGAATCAGCAAG-TTGGTTTTTGTCAAAGGGTAGGGTGCATAA 359
Query 360 CCACTTGGAGATT-CTTATACGAGTGAAGAATGTTTATGACAAGGGTGATACTGAGGCTA 418
||||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 360 CCACTTGGA-ATTGCTTACACGAGTGAAGAATGTGTATGATAAGGGTGATACTGAGTCTA 418
Query 419 AAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGATTTTGCCAGTGAATTTGCTCCCG 478
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 419 AAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGATTTTGCTAGCGAATTTGCTCCTG 478
Query 479 TGCGGTACTTGATTTTCACCAGTATGGTTTCTTCACATGATCTGGAGGTAAGATCAGCTC 538
| ||||| ||| |||||| ||||||||||||| | ||||||||||||| |||||||||||
Sbjct 479 TACGGTATTTGGTTTTCAGCAGTATGGTTTCTCCTCATGATCTGGAGGGAAGATCAGCTC 538
Query 539 TGTTTGCAGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCTTTGGTTGTTTTGGGGA 598
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 539 TGTTTGCTGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCATTGGTTGTTCTGGGGA 598
Query 599 TGTTAAATGACATGGTGAAGTTCCCAGAAATAATGCAAAAGACCAGGTTAGCTGCTGTGC 658
||||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 599 TGTTAAACGACATGGTGAAGTTCCCAGACATAACGCCAAAGACCAGGTTAGCTGCTGTGC 658
Query 659 GAGTTTTTGCAAAAATGGGATGCTCGCATGCAATTGCTAATAGAGCATTCAAGATCTGTA 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 659 GAGTTTTTGCAAAAATGGGATGCTCGCATACAATTGCTAATAGAGCATTCAAGATTTGTA 718
Query 719 TGAAGCTAATGCTGGACTCCCCAAAAGAGGACAATTTGATTCCATTCCTGGTTTCATTGA 778
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 719 TGAAGCTAATGCTGGACTCCCCAAAAGAGGACAATTTGGTTCCATTCCTGGTTTCCTTGA 778
Query 779 CTAAGCTTGCTTCAAGATCTACTCATCTTGCTTCTGAACTGACAGAAGTTATCATGCCCT 838
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||
Sbjct 779 CTAAGCTTGCTTCAAGATCAACTCATCTTGCTTCTGAACTGGCAGAGGTTATCATACCCT 838
Query 839 TTCTGAGTAAAGATAAGACTTCTCATG-TGCGAGCTGCGGTATTGAGATGTCTCCACTTT 897
||||| || ||||||| |||||||||| | |||||||| |||||||||||||||||||||
Sbjct 839 TTCTGGGTGAAGATAAAACTTCTCATGCT-CGAGCTGCAGTATTGAGATGTCTCCACTTT 897
Query 898 CTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAATAGAAATTGCAAGTGTTTCA 957
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 898 CTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGATATTGCAAGTGTTTCA 957
Query 958 AGCTTGCTAAAGCAAGAAGATCTCTCATCAGATATGCAACTTAAAGCTCTTCAAATTTTC 1017
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 958 AGCTTATTAAAGCAAGAAGAGCTCTCATCAGATATGCAAGTTAAAGCTCTTCAAATTTTT 1017
Query 1018 CAGAAGATACTTGTCTACAAACTATGCATGATTGATGCATTTGAATTACATCAGCTCATA 1077
||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1018 CAGAAGATAGTTGTCTACAAACTATGCATGACTGATGCATCTGAATTACTTCAGCTCATA 1077
Query 1078 GCTATTGTTGAGAATGCATCTCTTTCTCAGATCTTTTCAAGCAGTTGTTTAGCTATAAGT 1137
|||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 1078 GCTATTACTGAGAATGCATCTCATTCTCAGATCTTTTCAAGCAGTTGTTTAGCCATCAGT 1137
Query 1138 ATTTTGGTGGGTATATGGAAAGAAATAGAACGGACTGCAGAAATAAGATCAATCGAGGTT 1197
| |||||| ||||||||| |||||||| ||||| || |||| ||||||||| ||| |
Sbjct 1138 GTCTTGGTGAGTATATGGACAGAAATAGTTCGGACAGCGGAAAAAAGATCAATTGAGATA 1197
Query 1198 TCTTCAACATCTCTGCCTCTGCAGCTCGTTGTATTAATCATGGACAGGGTCACCCTACTG 1257
|||||||||||||| || |||||||||||||||||||||||||||||||| || | |||
Sbjct 1198 TCTTCAACATCTCTTCCGATGCAGCTCGTTGTATTAATCATGGACAGGGTCGCCTTGCTG 1257
Query 1258 GGGCGATTATGTTGTGATCCTTTTCAAGCTGAAGATGCAGTAGTTAGTGACGTTCAAGAG 1317
||||||||||||| ||||| ||||| ||||| |||| ||||||||||| ||||||||
Sbjct 1258 GGGCGATTATGTTCTGATCTTTTTCGAGCTGGCTATGCTGTAGTTAGTGAGGTTCAAGAC 1317
Query 1318 CTCTTGAAGGTTCTCCACCTA-TATGTAGGAAAACATTCTGAACTGAGGCTGCTAGTTCT 1376
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1318 CTCTTGAAGGTTCTCCACCTATTA-GTAGGAAAACATTCTGAACTGAGACTGCTAGTTCT 1376
Query 1377 TGAAAAAGTCAGATTATTCCTAGAGC-T-TATTGTGAACCTAAATGATGGCTTAAGAAAA 1434
||||||||||||||||||| || | | | |||||||| ||||||||||||||||||||||
Sbjct 1377 TGAAAAAGTCAGATTATTCTTA-A-CGTATATTGTGAGCCTAAATGATGGCTTAAGAAAA 1434
Query 1435 GCAGATGGAGCTCATGCATTGCTGTTTGGTGTTATCAATTATAAAGGCAAAAGAGGGGCG 1494
|||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 1435 GCAGATGGAGCTCATGAATTGCTATTTGGTGTTATCAATTATAAAGACAAAAGAGGGGTG 1494
Query 1495 GTGATGAGGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAGAAT 1554
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1495 GTCATGAGGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAAAAT 1554
Query 1555 CTCGAGGGCA-ATGATAATCTTTTGTCTGAAATTTACGAAAAGGTGAAGCATATCACTGA 1613
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1555 CTCGAGGG-AGATGATAATCTTTTGTCTGAAATTTATGAAAAGGTGAAGCATATCACTGA 1613
Query 1614 GTTTGTACGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTTACACTGCTATT 1673
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1614 GTTTGTAAGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTCACACTGCTACT 1673
Query 1674 ACATTCGCCGATTCTTTGGGGATTCTCTGTGAATGATGATGCAGGAAATTCAGGCGTCTC 1733
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1674 ACATTCCCCGATTCTTTGGGGATTCTCTGTGAATGATGATACAGGAAATTCAGGCGTATC 1733
Query 1734 ACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTT 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTT 1793
Query 1794 AATGGAGAGAAACTATTGGCCTGCCTACAGAGCTGGAGTTTACGCAGCACGTTTGGGTGC 1853
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1794 AATGGAGAGAAACTACTGGCCTGCTTACAGAGCTGGGGTTTACGCAGCACGTTTGGGTGC 1853
Query 1854 TTGGGTCATATCTGCTATGATTTTTGACCAGCTGAAAACCAACGTCCAGTCTGATATTAA 1913
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1854 TTGGGTCACATCTGCTATGATTTTTGACCAGCTCAAAACCAACGTCCAGTCTGATATTAA 1913
Query 1914 CTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCT 1973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCT 1973
Query 1974 TCTCACTCCTAGTGATAGTGTCAAATTAGTCAATTGGCTGAAAAGTAACTG-TTATTTAC 2032
||||||||| |||||||||||||| ||||||||||||||||||| ||| || ||||||||
Sbjct 1974 TCTCACTCCAAGTGATAGTGTCAAGTTAGTCAATTGGCTGAAAAATAA-TGGTTATTTAC 2032
Query 2033 CAGAACTGTCCAAAGATGCATCTGGAGAGTTTGCACACTGTCTAGCTCTTCATGAAGCTT 2092
||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2033 CAGAACTCTCCAAAGATGCCTCTGGAGAGTTTGCACACTGTCTAGCTCTTCGTGAAGCTT 2092
Query 2093 ATATGAATTTACAATCGTCACTGGGAATGATGGGAAATATTATAGCATCAAG-GGAAGTG 2151
||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||| ||
Sbjct 2093 ATATGAATTTACAATCGTCTCTGGGAATGTTGGGAAATATTATAGCGTCAAGTGGA-GTA 2151
Query 2152 TTTTGTTTCCAAACGTGGCTCTTGGTACTAAAGACTCGGTTACTTG-AAACCGTGCTTGA 2210
|| ||||||||||||||| ||||||| |||||||||||| || ||| |||||||||||||
Sbjct 2152 TTCTGTTTCCAAACGTGGTTCTTGGTTCTAAAGACTCGGGTA-TTGGAAACCGTGCTTGA 2210
Query 2211 ACTCGTCGAATGCCTCGGGCTGCTTGATCAAGATATCCACAACAAGAAGCAGGTGGAGGA 2270
||||||||||||||| ||||||||| | |||||| | | ||||||||| |||||||| ||
Sbjct 2211 ACTCGTCGAATGCCTTGGGCTGCTTAACCAAGATTTACGCAACAAGAATCAGGTGGAAGA 2270
Query 2271 AA-AGATCTCGACTGGTTGCAATTCCCTGCAACAGCTTCCTCAGATTTCTATTCAGCTAC 2329
|| | ||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2271 AATAC-TCTTGACTGGTTGCGATTCCCTGCAACAGCTTCCTCGGATTTCTATTCAGCTAC 2329
Query 2330 AAAAGTTGGCAAAGGAATTTGATATGTTAGCGACATGTTTTATAGACATAGACGATAGCA 2389
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 2330 AAAAGTTGGCAAAGGAATTTGATATGTTGGCGACGTGTTTCATAGACATAGACGATAGCA 2389
Query 2390 GTTCTAGCATTATCACGACATTTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAA 2449
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2390 GTTCTAGCATTATCACAACAATTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAA 2449
Query 2450 TTGTTCTTTTCCTACCAAGTTTTTCTTTTCATCAAGCGTTGGTTCCTTTCACTTCACAAA 2509
||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2450 TTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTGGTTCCTTTCACTTCACAAA 2509
Query 2510 GTGGTCTGTGCTCGAGGCTTGTACAAGATTTAGTTCGGCGGCTGTGGAAAGTGGACCCTG 2569
| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 2510 GCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGGCTGTGGAAAGTAGACCCC- 2568
Query 2570 AAA-TCTGCAAAAAGCTCAACATACTCGTTAAGACAAACGAATCATTTAACTGTCTCCAC 2628
|| ||||| |||||||||||||||||||||| |||||||| || || |||||| ||||
Sbjct 2569 AATGTCTGCGAAAAGCTCAACATACTCGTTAACACAAACGAGTCGTTAAACTGTTTCCAT 2628
Query 2629 TTGCAACCTAGGAATCAGGTATTGAGAGTCTGTGGCAAAGTGAAGATGTTGCTCTCTATT 2688
|||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 2629 TTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTAAAGATGCTGCTCTCTATT 2688
Query 2689 TGCAGAGACGCTCTTTCCTGCATTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAA 2748
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2689 TGCAGAGATGCTCTTTCATGCACTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAA 2748
Query 2749 GAGGAGATTATGTCTGAGATTACTAAAAGTTGCAGGAATCTACTGTCACAAGCAATTATG 2808
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2749 GAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTACTGTCACAAGCAATTATG 2808
Query 2809 AAATGGATGCAGATTCCTTTTGGCATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTT 2868
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2809 AAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTT 2868
Query 2869 GGTGTTGAGCTATTTGCTCTTAGTTCAGCGAGTAGCAAACGTACTCCTGATACAGTTTCG 2928
|||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 2869 GGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGTAGCAAACGTATTCCTGACACAGTTTCA 2928
Query 2929 GTGGAACAAGGCTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACGCACAACAA 2988
||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2929 GTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACATAAAACAA 2988
Query 2989 CAGCAAGTCCCTGTTCGACTTAACAAACTGTATTGCCTTCTCTATACTAAACTAGCTTAT 3048
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2989 CGGCAAGTCCCTGTTCGACTTAACAAACTGTATTGCCTTCTCTATACTAAACTAGCTTAT 3048
Query 3049 CACACTCCAACTCAACACGGTGAAACCAACAGAAACCAAAAGTCTTATACCCCATGGAGA 3108
|| ||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||
Sbjct 3049 CATTCTCCAACTCAACACGGTGAAAACAACAGAAACCAAATGTCTTATTCCCCTTGGAGA 3108
Query 3109 GATGAAGATCTGGTAGAAATGAGTAACAAGCTATTTCATCATGCTATAAAGTCTGGTAAG 3168
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3109 GATGAAGATCTGATTGAAATGAGTAACAAGCTGTTTCATCATGCTATAAAGTCTGGTAAG 3168
Query 3169 AAGCCGGAAGTTTCAGGTCGATTTGATTGGACCAAGAGTGGTGTTTCTACGGTTGTGGAG 3228
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 3169 AAGCCGGACGTCTCAGGTCGATTTGATTGGGCCAAGAGTGGTGTTTCTACGGTTGTGCAG 3228
Query 3229 TTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGCTAGACGTTTCGCGTTTC 3288
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3229 TTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGTTAGACGTTTCGCGTTTC 3288
Query 3289 CCAGTTGGTTCATATCAAATAAAATGGCTAAGCTGCTGCACTGATCAACATGGTTCTTAC 3348
|| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 3289 CCGGTTGGTTCATATCAAATAAAATGGCTAAGCTGTTGCGTTGATCAACATGGTTCTTAC 3348
Query 3349 TGGATTCTTCTACCTCTCAATGGCAAACCTGTGTTTACCATTAAGAAAGCTTCAT 3403
|||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 3349 TGGAATCTTCTACCTCTCAATGGCAAACCTGTGTTTACGGTTAAGAAAGCGTCAT 3403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169463933454
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5