BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354748
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17785.1 | Symbols: | zinc-binding protein-related | chr2:7... 525 2e-148
> AT2G17785.1 | Symbols: | zinc-binding protein-related | chr2:7728186-7728927
REVERSE LENGTH=579
Length=579
Score = 525 bits (284), Expect = 2e-148
Identities = 471/558 (84%), Gaps = 26/558 (5%)
Strand=Plus/Plus
Query 1 ATGAGTAAGCCGAGATGGTTTCAAGTATTAACAGAGGAAAACTTAGATGGATACTGCAAA 60
|||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||| | ||
Sbjct 1 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGACTTAGATGGAAACTACCAA 60
Query 61 AAGCATAGTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCATGTGACGTGGTGTGC 120
||||||| |||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 61 AAGCATACTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGCGACGTAGTGTGC 120
Query 121 CTTGAAGGCATAGATCC-ATACCATATTCAACCTCATGTTCAAGTGGTCC-CCTTGTTTG 178
| || ||||||||||| | |||||||||||||||||||||||||| | | || || |||
Sbjct 121 CCCGAGGGCATAGATCCCA-ACCATATTCAACCTCATGTTCAAGTG-TGCACCATGCTTG 178
Query 179 ATGTTAACGGCCTT-GA-CATGGACGAAATCTCTGATATCTTTGATTGTTTCCAAATTCA 236
|| |||||| |||| || | || || ||||||||||| |||||||||||| |||||||||
Sbjct 179 ATCTTAACG-CCTTTGAAC-TGAACCAAATCTCTGATCTCTTTGATTGTTCCCAAATTCA 236
Query 237 AAATAAAGGTCT-CATTGGAGGGAAGGGGCTGATAGCGTTGAGGCCATGGCGAAGA-TGT 294
|||| | ||| | | ||||||||||| | | ||| ||||||||||||| || || |||
Sbjct 237 AAATCATGGT-TACGTTGGAGGGAAGCAGTTTATAATGTTGAGGCCATGGAGA-GACTGT 294
Query 295 ATAAGAACTAAAGAAGGTTGCACTAAGCATGTCCGTGGGACG--T-CCAAGTTCTGCTCG 351
|||||| || ||||||||||||||| ||||||| |||| | ||||||||||| |
Sbjct 295 GTAAGAAATACAGAAGGTTGCACTAAACATGTCCAAGGGATTAATTCCAAGTTCTGCACT 354
Query 352 TTCACATGCAAGGTGGAACATGTTTTGGAGAATGAAGGTGATTTGTCTAGCATCA-TCAG 410
||||| |||||| | ||||||||||||||| |||||||||||||||| ||||| | | ||
Sbjct 355 TTCACCTGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCCAGCATTACT-AG 413
Query 411 AAATTGGTCA--G-AGGATGATTCAAGAGAAAC-GTCCGAACATATTGATGATCTATCAC 466
| |||||| | |||||||||| |||||| | ||| ||||| ||| |||| || ||
Sbjct 414 ACTTTGGTCGTCGGAGGATGATTCGAGAGAA-CTGTCAGAACACGTTGGTGATTTAGCAA 472
Query 467 TCCATCCTTGTGGTGATCCAGAGA-AAGTCTTTCCATTCAAA-AAGAGGTCTCGAAGACG 524
|||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||| |
Sbjct 473 TCCATCCTTGTGGTGATCCAGAGAGAA-TCTTTCCATT-AAAGAAGAGGTCTCGAAGAAG 530
Query 525 AATAGAGTTTTATGACAG 542
|| |||||||| ||||||
Sbjct 531 AAGAGAGTTTTTTGACAG 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5