BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354756
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 215 8e-55
> AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7082279-7083469 REVERSE LENGTH=1191
Length=1191
Score = 215 bits (116), Expect = 8e-55
Identities = 213/259 (82%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 413 TCTACATTATTGGCGGATACATCAACGGTGAGC-CATCGTCTAGGGTATTCGTCATGGAC 471
||||||| ||||| |||||||| || |||| || | || |||||||| ||| || ||||
Sbjct 455 TCTACATGATTGGGGGATACATAAATGGTGTGCTC-TCATCTAGGGTCTTCTTCTTGGAT 513
Query 472 TGTCGGTCTCACACCTGGCACGAAGCTCCAAGCATGCGGGTGGCTCGGAATTTCCCC-CT 530
|||||||||||||||||||| |||||||||||||||| ||| || | ||| ||||| ||
Sbjct 514 TGTCGGTCTCACACCTGGCATGAAGCTCCAAGCATGCAGGTAGC-CCGAAAGTCCCCACT 572
Query 531 CGTGAGTGCTGTTGATGGGAAAATATATGTAGTGGAAGGCTGCGACAA-TTGCAATCCCT 589
||||| || | ||||||||||||||||||||||||||||||| || | || | || ||
Sbjct 573 CGTGAATGTTCTTGATGGGAAAATATATGTAGTGGAAGGCTG-GAGAGGTTCCGATTACT 631
Query 590 CAGAATTT-ATGGAGTTTTTCGATCCCAAAACCCAGATGTGGGAGCATGTGCCAAGCCC- 647
| |||| | || ||| ||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 632 C-GAATCTCATCGAGATTTTCGATCCCAAAACCCAAAAATGGGAACATGTGCCAAGCCCT 690
Query 648 AGGAGCAGAGATACGCGGG 666
|| || ||||| || |||
Sbjct 691 AGC-GCGGAGATGCGTGGG 708
Score = 154 bits (83), Expect = 2e-36
Identities = 211/270 (78%), Gaps = 19/270 (7%)
Strand=Plus/Plus
Query 24 GTCGTCACCGGT-TAATATTCCATATCTCCCTGATGATATACTATTGAAC-TGCTTAGCC 81
||| ||||| || |||||| || || || ||||||||| ||||||| ||| | ||||| |
Sbjct 18 GTCTTCACC-GTGTAATATGCCTTACCTTCCTGATGATTTACTATTAAACAT-CTTAGGC 75
Query 82 CGCGTCTCAAGATTGTACTACCCAACTCTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTC 141
|| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 76 CGTGTCTCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTC 135
Query 142 CTCGCTTCGACA-GAGCTTTACGAGACCCGAAGGCTATTAGG-C-A-GCACCGAGAGTTG 197
| | || || ||||||||| ||| ||||| ||| |||| | | |||| |||| |||
Sbjct 136 GTTGGATC-ACTTGAGCTTTACAAGATCCGAACGCTCCTAGGACGACGCACTGAGAATTG 194
Query 198 TCCCTATGTCTCCTTAATGTTCCCTGGCA-GC-TCTAAGCCACGTTGGTTTACTCTGA-G 254
|| ||| | |||| ||| | | | | ||||| ||||||||||| ||||| | |
Sbjct 195 TCTTTATCTGAGCTTAC-GTTTCA-GTTATGGATCTAACCCACGTTGGTTCACTCT-ATG 251
Query 255 CCGT-GTACCAACTCGAATCCCCAA-CCCT 282
||| | ||||||||||| |||| | ||||
Sbjct 252 CCGAAG-ACCAACTCGAA-CCCCTAGCCCT 279
Score = 137 bits (74), Expect = 2e-31
Identities = 199/259 (77%), Gaps = 9/259 (3%)
Strand=Plus/Plus
Query 861 TTTGGAGAAACTGCCTAAATTACCAAAGGGTTATGGTCGTGTTAGGTTGGAGAATTGTGG 920
|||||| ||| | |||||||||| | | || | | || |||| ||| | ||| |||
Sbjct 939 TTTGGAAAAATTACCTAAATTACGACATCGTCGTTCTTGTATTAGAATGGTGGATTATGG 998
Query 921 TGGAAATATTTTGGTTTTTTGGGAGGAGAATGTCCGTGCTATTGGTTCT-ACCAAGAAGA 979
|||||| ||| | || | |||||| |||| || |||| | | || ||| | |||| | |
Sbjct 999 TGGAAAGATTGCGATTCTGTGGGAGAAGAAAGTGCGTGTTGTCGGCTCTGA-CAAG-A-A 1055
Query 980 AGATGATTTGGTGTGTTGAGGTTGCGATTGAAAGACGAAACAG-AGATGAGGTTTATGGG 1038
| |||||||||||| |||| ||||| ||||||| || | | | | || ||||||||
Sbjct 1056 A-ATGATTTGGTGTACTGAGATTGCGCTTGAAAGGCG-CAGTGCACACAAGATTTATGGG 1113
Query 1039 AAGGTTGAGTGGTGTGATGTTGTGCTTACAGTCCCCAAGTCATGTTCTTT-TGAGGAATT 1097
||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 1114 AAGATTGAGTGGTGTGATGTTGTGCTTACAGTGCCCAAGTCATGTTCTTTATT-GGAATT 1172
Query 1098 TGTTGTTGCCACTGTTTGA 1116
| ||| || ||| |||||
Sbjct 1173 TATTGCTGTTACTATTTGA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5