BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354764
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54070.1 | Symbols: | Ankyrin repeat family protein | chr3:... 702 0.0
AT5G35810.1 | Symbols: | Ankyrin repeat family protein | chr5:... 684 0.0
> AT3G54070.1 | Symbols: | Ankyrin repeat family protein | chr3:20021330-20023603
REVERSE LENGTH=1725
Length=1725
Score = 702 bits (380), Expect = 0.0
Identities = 763/941 (81%), Gaps = 54/941 (6%)
Strand=Plus/Plus
Query 999 GCTACTCTTTGATGCTGCGGAACTGGGAAATGTTGAGTTTTTAGTTATTCTTATTCGTTC 1058
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 771 GCTACTCTTTGATGCTGCGGAATTGGGAAATGTTGAGATTTTAGTTATTCTTATTCGTTC 830
Query 1059 TTACCCAGATCTAATATGGAAAGTTGATAACAAGT-GTCGAAGTTTATTTCACATTGCTG 1117
| | | |||||| |||||| ||||||||| || | |||| |||||| || ||||||
Sbjct 831 TCATCTAGATCTGCTATGGATAGTTGATAATAA-TAACCGAACTTTATTCCATGTTGCTG 889
Query 1118 CTTTATATCGCCATGAAAGCATATTCAAAATAATCTATGAACTCGGGGGCATCAAGGATC 1177
|||||||||| ||||||| || |||| ||||||||||||| || ||||||||||||
Sbjct 890 CTTTATATCGTCATGAAAATATCTTCAGCCTAATCTATGAACTTGGAGGCATCAAGGAT- 948
Query 1178 ATT--TAACATCTTATATAGAAGATGAATCCAAAAATAAC-TTGCTGCATTTTGTTGCAC 1234
|| || ||||||||| |||| | |||| ||| || || ||| ||||| |||| ||||
Sbjct 949 -TTGATAGCATCTTATAAAGAAAAACAATCTAAAGAT-ACTTTGTTGCATCTTGTGGCAC 1006
Query 1235 GTTTACCACCTCCAAATCGGCTACATGTTGTATCAGGAGCAGCACTTCAGATGCAAAGAG 1294
| ||||||||| ||||| | ||| |||| |||||||||||||||||| ||||||| ||
Sbjct 1007 GGTTACCACCTATGAATCGTCAACAAGTTGGATCAGGAGCAGCACTTCATATGCAAAAAG 1066
Query 1295 AGCTCCTTTGGTTCAAGGCTGTTAAAGAGATAGTTCCTCGTTCATACATC-AAAACAAAA 1353
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 1067 AGCTCCTTTGGTTCAAGGCTGTTAAAGAAATAGTTCCTCGTTCATACATCGAAACCAAAA 1126
Query 1354 A-ACAAAGATGGCCAGGTAGCGCATGATCTATTCACAAAAGAACACGAAAATTTACGCAA 1412
| || ||| ||| | ||||||||||| ||||||| || |||||||||| ||||||||
Sbjct 1127 ACACTAAG--GGCGAACTAGCGCATGATATATTCACGGAACAACACGAAAACTTACGCAA 1184
Query 1413 AGAAGGAGAGAAATGGATGAAAGAAACTGCGACAGCATGTATGCTCGGGGCAACGCTGAT 1472
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1185 AGAAGGAGAGAGATGGATGAAAGAAACCGCGACAGCATGTATGCTCGGAGCAACGCTGAT 1244
Query 1473 AGCAACTGTGGTCTTTGCAGCAACCTTTACTCTACCGGGTGGCACTGAC-A--C---TG- 1525
|||||||||||||||||||||| || ||||| |||| ||||| | ||| | | ||
Sbjct 1245 AGCAACTGTGGTCTTTGCAGCAGCCATTACTATACCAGGTGGAAATGATGATTCAGGTGA 1304
Query 1526 ----G-AT-TACC--GGGCTTCCCTCAATTT-AGAGGG-GAGTTATGGTTC-ACCATATT 1574
| | ||| ||||||||| ||||| ||| | || |||| |||| | |||||
Sbjct 1305 CAAAGCAAATACGTTGGGCTTCCCA-AATTTTAGAAAGAGA-TTATTGTTCGAT-ATATT 1361
Query 1575 TATCTTATCAGATTCGGCTGCGCTCTTCTCATCTG-TGATAG-CTATTGTGTTATTCTTG 1632
|| |||||||||||||| ||| ||||||||||| | |||| | |||| ||| |||| ||
Sbjct 1362 TACCTTATCAGATTCGGTTGCCCTCTTCTCATC-GATGAT-GTCTATCGTGATATTTTTA 1419
Query 1633 TCGATCTTGACTTCTCGATATGCAGAAGATGACTTCCGG-ACGAAGTTACCGACAAAGCT 1691
|||||||| |||||||| || |||||||| || || || | || ||||| ||||||||
Sbjct 1420 TCGATCTTCACTTCTCGGTACGCAGAAGAGGATTTTCGTTATGAT-TTACCAACAAAGCT 1478
Query 1692 AATGTTGGGACTTTTTGCATTGTTTATCTCAATAAACACTATGGTTCTTGCCTTCACCG- 1750
||||| ||||||| |||||||||||||| || | | ||||| ||||||||||||||
Sbjct 1479 TATGTTCGGACTTTCGGCATTGTTTATCTCGATCATCTCTATGATTCTTGCCTTCACCTT 1538
Query 1751 CGTCAATGATATTGATCCGCAGAGTCGATGAACCTGTG-TGGAGATTAATCCTCATCGT- 1808
| || ||||| |||||||| | | || || || | | ||| ||| |||||||| |
Sbjct 1539 C-TCGATGATCTTGATCCGT-GT-T-GAAAAAGCT-TCCTTGAGCTTAGTCCTCATC-TC 1592
Query 1809 TTGCCTTTCTTCTCTCGCCGCTATCACATTTGCTTTGTTGCATGTTAAGCTTTGGTTTAT 1868
||||||| |||||||| | ||| |||| ||||||| ||| || || | ||||||||||
Sbjct 1593 TTGCCTTGCTTCTCTCACGGCTCTCACGTTTGCTTACTTGTATTTTCACCTTTGGTTTA- 1651
Query 1869 AACACT-T-CGCTCAG-CATATTTTTCAAAGTTTCTCTTCC 1906
| |||| | ||||||| | ||| |||| | |||||||||||
Sbjct 1652 A-CACTCTACGCTCAGTC-TATATTTCTATGTTTCTCTTCC 1690
> AT5G35810.1 | Symbols: | Ankyrin repeat family protein | chr5:13993428-13994549
REVERSE LENGTH=1044
Length=1044
Score = 684 bits (370), Expect = 0.0
Identities = 779/973 (80%), Gaps = 41/973 (4%)
Strand=Plus/Plus
Query 988 TCACCTTCAAAGCTACTCTTTGATGCTGCGGAA-CTGGGAAATGTTGAGTTTTTAGTTAT 1046
||| || ||| |||||||||||||||||| || || |||||| ||||| ||||| ||||
Sbjct 88 TCATCTCCAATGCTACTCTTTGATGCTGCACAATCT-GGAAATCTTGAGCTTTTACTTAT 146
Query 1047 TCTTATTCGTTCTTACCCAGATCTAATATGGAAAGTTGATAACAAGTGTCGAAGTTTATT 1106
||| ||||||||||| |||||||| ||||||| || ||| | ||| | ||| || ||
Sbjct 147 TCTCATTCGTTCTTATCCAGATCTGATATGGACGGTGGATCATAAGAACCAAAGCTTGTT 206
Query 1107 TCACATTGCTGCTTTATATCGCCATGAAAGCATATTCAAAATAATCTATGAACTCGGGGG 1166
|||||||||||| || |||| ||||||| || || || | |||||||||||||||||
Sbjct 207 CCACATTGCTGCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGC 266
Query 1167 CATCAAGGATCATTTAACATCT-TATATAGA-AG-ATGAATCCAAAAATAACTTGCTGCA 1223
|||||| | |||| | | || | |||| | || | |||||||| | |||||| ||||
Sbjct 267 CATCAA--A-GATTTGATAGCTATGTATAAAGAGAAAGAATCCAACGACAACTTGTTGCA 323
Query 1224 TTTTGTTGCACGTTTACCACCTCCAAATCGGCTACATGTTGTATCAGGAGCAGCACTTCA 1283
| |||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 324 TCTTGTGGCACGTTTACCACCTCCAAATAGGTTACAAGTTGTATCAGGAGCAGCACTTCA 383
Query 1284 GATGCAAAGAGAGCTCCTTTGGTTCAAGGCTGTTAAAGAGATAGTTCCTCGT-TCATACA 1342
||||||||||||| | ||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 384 GATGCAAAGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGT-ATACA 442
Query 1343 TCAAAACAAAAAACAAAGATG-GCCAGGTAGCGCATGATCTATTCACAAAAGAACACGAA 1401
|||||||||| |||||| | | | |||| |||||||||||||| || ||||| || ||
Sbjct 443 TCAAAACAAAGAACAAAAAAGAG-GAGGTGGCGCATGATCTATTTACGAAAGAGCATGAC 501
Query 1402 AATTTACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGACAGCATGTATGCTCGGG 1461
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 502 AACTTACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGACTGCATGCATTCTTGTA 561
Query 1462 GCAACGCTGATAGCAACTGTGGTCTTTGCAGCAACCTTTACTCTACCGGGTGGCA-CTGA 1520
|||| |||||||||||||||||||||||||| ||||||||||||| ||||| | | ||
Sbjct 562 TCAACACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTCTACCTGGTGGAAAC-GA 620
Query 1521 CAC---TGG--AT-TA----C-CG-GGCTTCCCTCAATTT-AGAGGGGAGTTATGGTTC- 1566
|| ||| | || | | ||||||||| | ||| ||| |||||| |||||
Sbjct 621 TACGAGTGGCGACATAAAAACACTAGGCTTCCCT-ACTTTTAGAAAGGAGTTCTGGTTTG 679
Query 1567 ACCATATTTATCTTATCAGATTCGGCTGCGCTCTTCTCATCTGTGATAGCTATTGTGTTA 1626
| | |||||| |||||||||||| ||| ||| | |||||||||| | ||||| || ||
Sbjct 680 AAG-TGTTTATCATATCAGATTCGGTTGCCCTCCTATCATCTGTGACATCTATTATGATA 738
Query 1627 TTCTTGTCGATCTTGACTTCTCGATATGCAGAAGATGACTT-CCGGACGAAGTTACCGAC 1685
|| ||||| ||| |||| ||||| |||||||||| | | || || ||||| ||||| ||
Sbjct 739 TTTTTGTCAATCCTGACATCTCGTTATGCAGAAGCT-AGTTTCCAGACGACTTTACCAAC 797
Query 1686 AAAGCTAATGTTGGGACTTTTTGCATTGTTTATCTCAATAAACACTATGGTTCTTGCCTT 1745
|||||||||||||||||||| ||||||||| | ||||| | | ||||||||||||||
Sbjct 798 GAAGCTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTTGCCTT 857
Query 1746 CACCGCGTCAATGATATTGATCCGCAGAGTCGATGAACCTGTGTGGAGATTAATCCTCAT 1805
||| ||| || |||| |||||||| || || | |||||| ||||| ||||||||| |
Sbjct 858 CACAGCGACATTGATCTTGATCCGT-GA-TCAA-GAACCTAAATGGAGCTTAATCCTCTT 914
Query 1806 CGTTTGCCTTTCTTCT-CTCGCCGCTATCACATTTGCTT-TGTTGCATGTTAAGCTTTGG 1863
|||| | | ||||| | | | ||| || |||||| | |||||||| || ||||||||
Sbjct 915 AGTTTACGTGGCTTCTGC-CACGGCTCTCTCATTTG-TGGTGTTGCATTTTCAGCTTTGG 972
Query 1864 TTT-ATAACACTTCGCTCAGCATATTTTTCAAAGTTTCTCTTCCGTAAATGTAAGAGTGT 1922
||| | | ||||||||||||| ||| | || ||||| ||||| | | | |||| ||||
Sbjct 973 TTTGACA-CACTTCGCTCAGCCTATCTGTCTAAGTTCCTCTTTCATGGACGTAAAAGTGG 1031
Query 1923 TCTCTTCCTCTAA 1935
|||| |||||||
Sbjct 1032 CCTCTACCTCTAA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95832840405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5