BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354766

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydr...   462    1e-129


> AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase 
2B4 | chr3:17716867-17720020 REVERSE LENGTH=2009
Length=2009

 Score =  462 bits (250),  Expect = 1e-129
 Identities = 289/308 (94%), Gaps = 2/308 (1%)
 Strand=Plus/Plus

Query  3    GTCAAGAGTAATGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGTGAAGAACTCGCGTC  62
            |||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  540  GTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGCGTC  599

Query  63   TCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCCAAT  122
            ||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||| ||
Sbjct  600  TCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCCCAT  659

Query  123  GTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAGT  182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  660  GTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAAT  719

Query  183  TCCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCTGGACA  242
            ||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct  720  TCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGGACA  779

Query  243  GATCATTCC-TAGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTACTCTTG  301
            |||||| || | |||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct  780  GATCATACCGT-GGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTG  838

Query  302  CTTGTGGT  309
            ||||||||
Sbjct  839  CTTGTGGT  846


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 105/113 (93%), Gaps = 1/113 (1%)
 Strand=Plus/Plus

Query  311   GGTCTTCCTCCTGGTGTTTTGAATATAGTTTCTGGATTCGGTGCAACTGCAGG-GCTGCC  369
             |||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct  922   GGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGGGATTCGGTGCAACAGCAGGTGCTGCC  981

Query  370   CTCGCTAGTCACATGGATGTAGACAAGCTTGCTTTTACAGGATCAACTGATAC  422
             ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  982   CTCGCGAGTCATATGGATGTAGACAAGCTTGCTTTTACAGGATCGACTGATAC  1034


 Score =  141 bits (76),  Expect = 6e-33
 Identities = 82/85 (96%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  432   CAATGTTGCTGAGCGGGGTCTCGGACATTTGTTTATGAGAAAGTGTATGATGAGTTTGTT  491
             ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1186  CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT  1245

Query  492   GAGAAATCAAAGGCACGGGCATTGA  516
             ||||||||||||||||| |||||||
Sbjct  1246  GAGAAATCAAAGGCACGCGCATTGA  1270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5