BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354767
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35935.1 | Symbols: | transposable element gene | chr5:1408... 472 4e-132
AT3G27906.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 307 1e-82
> AT5G35935.1 | Symbols: | transposable element gene | chr5:14083388-14089891
REVERSE LENGTH=6504
Length=6504
Score = 472 bits (255), Expect = 4e-132
Identities = 432/515 (84%), Gaps = 22/515 (4%)
Strand=Plus/Plus
Query 419 ATGGTCGAGGACTCCATTCAATTCTAGGAAC-AATGCCTTTAGAGGGGATTTGCTTATTC 477
||||||| ||||||||| ||| | ||||||| ||| | ||||||| || ||||||||||
Sbjct 628 ATGGTCGTGGACTCCATCCAACTGTAGGAACAAAT-TCGTTAGAGGAGACTTGCTTATTC 686
Query 478 AATTATCGAAACCTGATGGATAGTGCTGTTTATTTATCACCGGATGCAACTCTAATTTTG 537
| ||||||||||||||||||||||| || || ||| ||||||||||||||||||||| ||
Sbjct 687 ATTTATCGAAACCTGATGGATAGTGTTGATTGTTTTTCACCGGATGCAACTCTAATTGTG 746
Query 538 AAGCTCAGTGGATTAGTATTTTTCTCAAACTTTAGATGTTGTGATGCGATTC-AAGCATC 596
||||| |||||||||||||||||||||||| ||| ||||||||||||| || ||| |
Sbjct 747 AAGCTTAGTGGATTAGTATTTTTCTCAAACCTTATTTGTTGTGATGCGA-TCTTTGCACC 805
Query 597 GGCTCTTATATGTGAATATATATTGAGTATGGATATTCCCACCAGCAAGCCTAACTATGG 656
| || ||| |||| | ||| ||||| || |||||||||| |||||||||||| |||
Sbjct 806 TGTTCCTATTTGTGTTTGTATCTTGAGGATCTATATTCCCACTAGCAAGCCTAACCATGT 865
Query 657 CGCCCCCAGACTAATGGGTGAAGCATCCCAACCCTCTCGAACCTTTTGGATAAAACCGCC 716
| |||| || |||||||| |||||||||||||| |||| ||| |||||||||||||||||
Sbjct 866 CACCCCAAGCCTAATGGGCGAAGCATCCCAACCTTCTCAAACTTTTTGGATAAAACCGCC 925
Query 717 TC---GAAAACTCTATCCGAGTC-CCGCTGCATT-TTCTGCGTTTTGGACTTGTGATATT 771
|| |||||||| ||||||| | |||||||||| || || || |||||||||||| |||
Sbjct 926 TCAAAGAAAACTCCATCCGAG-CTCCGCTGCATTCTT-TGTGTATTGGACTTGTGA-ATT 982
Query 772 -CTTTGGCGAATCCAGCAAACTTACTCCTCTAAGGAGATACCATCGCCGGAACCTTACTC 830
| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 983 CCCTTGGCGAATCCAGCAAACTTACTCCTCTATGGAGATACCATCTTTGGAACCTTACTT 1042
Query 831 TCGCATTG-GGAAAAAGTCTCCACCCGCAGCCTCCTACATGGAGA-AC-TTCTACAAAAG 887
| ||| | |||||| | |||| |||||| |||||| |||||| | || || | | ||||
Sbjct 1043 TGGCAGCGAGGAAAA-GCCTCCGCCCGCAACCTCCTCCATGGA-ACACCTTTT-CGAAAG 1099
Query 888 CTCTTATG-CGTTCAATCGTGCGAGCTTATTATGA 921
||||| || |||| |||||| ||||||||||||||
Sbjct 1100 CTCTT-TGGCGTT-AATCGTACGAGCTTATTATGA 1132
Score = 265 bits (143), Expect = 7e-70
Identities = 213/246 (87%), Gaps = 7/246 (3%)
Strand=Plus/Plus
Query 172 TTGGATGCATCTCTGTCTTCT-AACCCAAAACCAGAAGCTTCACAACAGTCCAACGGCTC 230
|||||| |||||||||| || || |||||| |||||| | ||||||||| || ||||||
Sbjct 200 TTGGATCCATCTCTGTC-CCTGAAACCAAAATCAGAAGATCCACAACAGTTCAGCGGCTC 258
Query 231 CTCCCCTCAAACATCAGAGCAAGGCTTCATCGACATAACAATAGTCTCTAGATCTGGACT 290
| ||||||||||||||||||| ||||||||| || | ||| |||||||||||||||
Sbjct 259 TTTACCTCAAACATCAGAGCAAGTCTTCATCGATTTATCTTTAGGCTCTAGATCTGGACT 318
Query 291 ATCACCGACGCCATTTATGGCTCCTTCTCACCGGATTTCGTTGATGGCAGGAGTATCTCT 350
| || || | ||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 319 AGCAACGCCACCA-TTA--GTTCCTTCTCACCGGATTTCGTTGATGGCAGGAGTATCTCT 375
Query 351 TGGACCATCAGATGTGTC-TTTTCCGGTGGGAACGTCGATGGCACACGACGAGCTCAAAC 409
|||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||
Sbjct 376 TGGACCATCAGATGTG-CATTTTCCGGTGAGAACGTCGACGGCACACGACGAGCTCAAAA 434
Query 410 GCTGGC 415
||||||
Sbjct 435 GCTGGC 440
> AT3G27906.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G19240.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr3:10355513-10356437 REVERSE LENGTH=925
Length=925
Score = 307 bits (166), Expect = 1e-82
Identities = 230/260 (88%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 168 GATTTTGGATGCATCTCTGTCTTCTAACCCAAAACCAGAAGCTTCACAACAGTCCAACGG 227
||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||| |
Sbjct 238 GATCTTGGATGCATCTCTGTCTTCGAACCCAAAACAAGAAAATTCACAACAGTCCAACAG 297
Query 228 CTCCTCCCCTCAAACATCAGAGCAAGGCTTCATCGACATAAC-AATAGTCTCTAGATCTG 286
|||||| |||||||||||||||||| ||||||| || || | || || |||||||||||
Sbjct 298 CTCCTCTTCTCAAACATCAGAGCAAGACTTCATCAACTTATCAAAAAG-CTCTAGATCTG 356
Query 287 GACTATCACCGACGCCA-TTTATGGCTCCTTCTCACCGGATTTCGTTGATGGCAGGAGTA 345
||||| |||| || ||| || ||| | ||||||||||| ||||||||||||||||||||
Sbjct 357 GACTAGCACCAACACCACCTT-TGGTTTCTTCTCACCGGTTTTCGTTGATGGCAGGAGTA 415
Query 346 TCTCTTGGACCATCAGATGTGTCTT-TTCCGGTGGGAACGTCGATGGCACACGACGAGCT 404
||||||||||||||||||||| ||| ||||| |||||||||||| |||||||||||||||
Sbjct 416 TCTCTTGGACCATCAGATGTG-CTTCTTCCGCTGGGAACGTCGACGGCACACGACGAGCT 474
Query 405 CAAACGCTGGCAGAATGGTC 424
|||||||||||| | |||||
Sbjct 475 CAAACGCTGGCA-A-TGGTC 492
Score = 99.0 bits (53), Expect = 7e-20
Identities = 70/78 (90%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 419 ATGGTCGAGGACTCCATTCA-ATTCTAGGAACAATGCCTTTAGAGGGGATTTGCTTATTC 477
||||||| ||||||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 698 ATGGTCGTCGACTCCATTCAGCTT-TAGGAACAATGCATCTAGAGGGGATTTGCTTATTC 756
Query 478 AATTATCGAAACCTGATG 495
|||||||||||||| |||
Sbjct 757 AATTATCGAAACCTTATG 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5