BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354789
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r... 1343 0.0
> AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein
4r1 | chr3:6200578-6204583 FORWARD LENGTH=2655
Length=2655
Score = 1343 bits (727), Expect = 0.0
Identities = 1276/1528 (84%), Gaps = 89/1528 (6%)
Strand=Plus/Plus
Query 576 TATGCCAGCTACAAGTTCAGGTTTCCCTGAAGCTGCACTAGCCTTTCTTGATGCAATCCG 635
|||||||||| | |||||| |||||||||||||||||| ||| ||| ||||||||||| |
Sbjct 750 TATGCCAGCTGCGAGTTCAAGTTTCCCTGAAGCTGCACGAGCGTTTGTTGATGCAATCAG 809
Query 636 GAAG-AACAG-GTTATATCAGAAGTTTCTTCGAAGACAATTGAG-TGAAATCGAAGCAAC 692
| || ||||| | ||||||||| |||||| || || ||||| | ||||| ||||||||
Sbjct 810 G-AGAAACAGAG-CATATCAGAAATTTCTTAGAGGAAAATTG-GCAGAAATTGAAGCAAC 866
Query 693 GATTGAGCAGAACGAGAAACACAGGAAAAATGTTAAG-ATAGTTAAAGATTTTGAAGCTT 751
||| ||||||||||||||||||| |||||||||| || ||||| ||||||||| ||||||
Sbjct 867 GATCGAGCAGAACGAGAAACACAAGAAAAATGTT-AGAATAGTCAAAGATTTTCAAGCTT 925
Query 752 CTTGCAAGAGAATTACTAAACAGGCACTTTCTCGAG-GGAAAGATCCTCGAGTCGAATTA 810
||||||||||||||||||||| |||||| | || || ||||||||||||| |||||||||
Sbjct 926 CTTGCAAGAGAATTACTAAACTGGCACTCTGTC-AGAGGAAAGATCCTCGTGTCGAATTA 984
Query 811 ATCTCAACTCCAAAATCTAGG-C---------CT-----G--ATT----C-TG-G-TAGC 846
|||||||| | |||||| || | || | ||| | || | ||||
Sbjct 985 ATCTCAACACGGAAATCTGGGCCTTGTGATAGCTCCGAGGTAATTGGGCCTTGTGATAGC 1044
Query 847 TCCGGGGGTAATGATAAAAAGACATCTTATTTGAC-TATGGGTCC-GCCGGAAAATACTT 904
| || ||||||||||||||||| |||| |||||| | ||||||| | ||||||| |||
Sbjct 1045 TTCGAGGGTAATGATAAAAAGATATCTCCTTTGACGT-TGGGTCCAG-CGGAAAACCCTT 1102
Query 905 GTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAGTTTCCGTGGATCGC-GCAAAT 963
|||||||||||||||||||||||||||||||||||||| |||| ||| | ||| | |||
Sbjct 1103 GTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTTCAGTGAAACGCAG-AAAA 1161
Query 964 TGGACTACTGAGGAGAAGGAAAATCTTGCAAAAGGTCTAAAACAACAAGTTCAAGACACA 1023
||| ||||||||||||| |||| || ||||||||| |||||||| |||||||| | | |
Sbjct 1162 TGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAACAAGAAGTTCAAAAGATA 1221
Query 1024 CT-CATTCGTGAAGCTTTTGAACGGTCCAGTGACTTGGAAGGATCTACAGATGGTATAAA 1082
|| | ||| |||||| |||||||||||||||||||||||||| ||||| ||| |||| |
Sbjct 1222 CTGCTTTC-TGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAGCTACATATGATATAGA 1280
Query 1083 CACCATTC-TTGAAGGGAT-AAAAAGTCTTGAGATCACACCAGAAATGATTAGGCAGTTT 1140
||| | || |||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1281 CACTA-TCAATGAATCGATCGGAAA-TCTTGAGATCACACCAGAAATGATTAGGCAGTTT 1338
Query 1141 CTTCCGAAAGTTAATTGGGA-TCAATTGGATATCAAGAACCGTTCTGCTGCAGAATGTGA 1199
||||||||| |||| ||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 1339 CTTCCGAAAATTAACTGGGATTC-GTTGGATATCAAGGACCGTTCTGCTGCAGAATGTGA 1397
Query 1200 AGCCCGGTGGATGAGCTCGGATGATCCATTGATTAACAACGGTCCATGGACTGTAGCAGA 1259
||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||
Sbjct 1398 AGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGTGGACTGCAGCAGA 1457
Query 1260 AGACAATTACATACGCTTATTTA-CCAA-AAACAAGGGTTTTACAGACTGGCTTGACATT 1317
||||| || ||| | | || | || |||| | || ||||||||||| |||| ||
Sbjct 1458 GGACAAAAACCTACTCCGAACTATCGAACAAAC--GAGTCTTACAGACTGGGTTGATATC 1515
Query 1318 GCGGTATCACTGGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGATATCAGAGAAGC 1377
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 GCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGATATCAGAGAAGC 1575
Query 1378 TTGAATCCA-GATATATTGAGAAAAGAATGGACTGCAGAGGAAGATGACCAACTCCGTGC 1436
||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1576 TTGAATCCAAGC-ATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACCAACTTCGTAC 1634
Query 1437 CGCAGTAGACTTGTTTGGCGAGTCAGACTGGCAATCTGTTGCAAATGTATTACAAGGAAG 1496
|||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 1635 TGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTATTAAAAGGAAG 1694
Query 1497 AACTGGACCTCAGTGCTCTAATAGATGGAAAAAGTCGCTTCACCCTAGCAGAACAAGGAA 1556
||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||| |
Sbjct 1695 AACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCAGAA-AAGGGA 1753
Query 1557 ACGAAACTGGAGCTCAGAGGAAGACAAACGAT-TGAAAG-TAGCTGTAACACTGTTTGGA 1614
| | ||||||| ||||||||||||||| | | |||| ||||||| ||||| ||||||
Sbjct 1754 -C-A---TGGAGCTTAGAGGAAGACAAACG-TGT-AAAGGTAGCTGTGACACTCTTTGGA 1806
Query 1615 ACTAAAAACTGGCGTAAAATTGGTCAGTTTGTTCCTGGACGGACGG-GTACTCAGTGTCT 1673
|| ||||||||| ||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 1807 TCTCAAAACTGGCATAAAATTTCTCAGTTTGTTCCTGGACGGACTCAG-ACTCAGTGTCG 1865
Query 1674 AGAGAGATGGGGAAATTCTTTAGATCCCAAACTTAAATT-TGGGAAGTGGACCAAGGAAG 1732
||||||||| ||||| ||||||||||||| | |||| |||||||||||| ||||||
Sbjct 1866 GGAGAGATGGTTAAATTGTTTAGATCCCAAAGT-AAATCGTGGGAAGTGGACTGAGGAAG 1924
Query 1733 AGGATGCAAAA-TTGAGAGAAGCAAT-GAAAGAACATGGACATTGTTGGTCTAAAGTTGC 1790
|||||| |||| |||||||||||||| | | || |||||| || | |||||||| || ||
Sbjct 1925 AGGATG-AAAAGTTGAGAGAAGCAATTGCA-GAGCATGGATATAGCTGGTCTAAGGTGGC 1982
Query 1791 TTCATA-TATGTCTTGTCGCACTGACAGTCAGTGCGCGAGGAGATGGAAGAGCTTATATC 1849
| | || | |||| ||||| ||||||| ||||||| ||||||||||||||| |||||||
Sbjct 1983 TAC-TAATCTGTCATGTCGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGATTATATC 2041
Query 1850 CTCACCTAGCG-CATCTTAGACAAGAAGCTAGAAGGTTACAAAAAGAAGCTACTATAGGT 1908
|||| | || | | |||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 2042 CTCATCAAGTGGC-TCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGTGTAGGT 2100
Query 1909 AATTTTGTTGACCGCGAATCAGAGCGTCCAGATCTTGTCGTAGGCGATTTTTTGGCACTA 1968
||||||||||| || |||||||||||||| | ||||||| | || | |||||||||||
Sbjct 2101 AATTTTGTTGATCGGGAATCAGAGCGTCCTGCTCTTGTCACAAGCCCTATTTTGGCACTA 2160
Query 1969 GCTGAGATATCTCTTGAGCCAGAA---GA-ACCTGT--CC-TGACGAAGAAACGAAAA-C 2020
| || |||||||| ||||||||| || | ||| || ||| ||||||||| ||| |
Sbjct 2161 CCGGATATATCTCTAGAGCCAGAACCCGATAG-TGTAGCCCTGAAGAAGAAACGCAAAGC 2219
Query 2021 CAAGACATACGAAGAAGGCAGATACAGA 2048
|||| || ||||||| ||||| ||||
Sbjct 2220 CAAG-CA---GAAGAAGTCAGATGCAGA 2243
Score = 272 bits (147), Expect = 1e-71
Identities = 208/236 (88%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 295 GACGAAGATGAAGATGGTGCATTTGAAACCCTTCGCGCTATTCGTAGACGATTCTTTGCT 354
||||| || ||||||| ||| |||||||| ||||| ||||||||||| ||||||| ||||
Sbjct 505 GACGATGAAGAAGATGATGCCTTTGAAACACTTCGTGCTATTCGTAGGCGATTCTCTGCT 564
Query 355 TATGAA-AATTTCGATGT-GGAAGGAAATTTCATGAATGATTCTTCACCCGGGAAGAAGA 412
||| || ||||||||| | ||||||||| |||||||||||||| ||| | || |||||
Sbjct 565 TAT-AAGAATTTCGAT-TCGGAAGGAAAATTCATGAATGATTC-TCA--C-GG--GAAGA 616
Query 413 AAAAGCAGGTACATGCCTCGGATAATGAACCTTCAACCGAAATATTGAGTAGATCTAATA 472
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 617 AAAAGCAGGTACATAACTCGGACAATGAACCTTCAAGCGAAATATTGAGTAGATCTAATA 676
Query 473 CTTGTGAAAGCTTTCCAGATCACGGGAAATCAGCTGTTACAGAGCCAGATTCAGAG 528
||||||||||||||||||||||||||||||||| ||| || | |||||| ||||||
Sbjct 677 CTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACTGTGCCAGACTCAGAG 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115862857860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5