BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354789 Length=2334 Score E Sequences producing significant alignments: (Bits) Value AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r... 1343 0.0 > AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r1 | chr3:6200578-6204583 FORWARD LENGTH=2655 Length=2655 Score = 1343 bits (727), Expect = 0.0 Identities = 1276/1528 (84%), Gaps = 89/1528 (6%) Strand=Plus/Plus Query 576 TATGCCAGCTACAAGTTCAGGTTTCCCTGAAGCTGCACTAGCCTTTCTTGATGCAATCCG 635 |||||||||| | |||||| |||||||||||||||||| ||| ||| ||||||||||| | Sbjct 750 TATGCCAGCTGCGAGTTCAAGTTTCCCTGAAGCTGCACGAGCGTTTGTTGATGCAATCAG 809 Query 636 GAAG-AACAG-GTTATATCAGAAGTTTCTTCGAAGACAATTGAG-TGAAATCGAAGCAAC 692 | || ||||| | ||||||||| |||||| || || ||||| | ||||| |||||||| Sbjct 810 G-AGAAACAGAG-CATATCAGAAATTTCTTAGAGGAAAATTG-GCAGAAATTGAAGCAAC 866 Query 693 GATTGAGCAGAACGAGAAACACAGGAAAAATGTTAAG-ATAGTTAAAGATTTTGAAGCTT 751 ||| ||||||||||||||||||| |||||||||| || ||||| ||||||||| |||||| Sbjct 867 GATCGAGCAGAACGAGAAACACAAGAAAAATGTT-AGAATAGTCAAAGATTTTCAAGCTT 925 Query 752 CTTGCAAGAGAATTACTAAACAGGCACTTTCTCGAG-GGAAAGATCCTCGAGTCGAATTA 810 ||||||||||||||||||||| |||||| | || || ||||||||||||| ||||||||| Sbjct 926 CTTGCAAGAGAATTACTAAACTGGCACTCTGTC-AGAGGAAAGATCCTCGTGTCGAATTA 984 Query 811 ATCTCAACTCCAAAATCTAGG-C---------CT-----G--ATT----C-TG-G-TAGC 846 |||||||| | |||||| || | || | ||| | || | |||| Sbjct 985 ATCTCAACACGGAAATCTGGGCCTTGTGATAGCTCCGAGGTAATTGGGCCTTGTGATAGC 1044 Query 847 TCCGGGGGTAATGATAAAAAGACATCTTATTTGAC-TATGGGTCC-GCCGGAAAATACTT 904 | || ||||||||||||||||| |||| |||||| | ||||||| | ||||||| ||| Sbjct 1045 TTCGAGGGTAATGATAAAAAGATATCTCCTTTGACGT-TGGGTCCAG-CGGAAAACCCTT 1102 Query 905 GTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAGTTTCCGTGGATCGC-GCAAAT 963 |||||||||||||||||||||||||||||||||||||| |||| ||| | ||| | ||| Sbjct 1103 GTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTTCAGTGAAACGCAG-AAAA 1161 Query 964 TGGACTACTGAGGAGAAGGAAAATCTTGCAAAAGGTCTAAAACAACAAGTTCAAGACACA 1023 ||| ||||||||||||| |||| || ||||||||| |||||||| |||||||| | | | Sbjct 1162 TGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAACAAGAAGTTCAAAAGATA 1221 Query 1024 CT-CATTCGTGAAGCTTTTGAACGGTCCAGTGACTTGGAAGGATCTACAGATGGTATAAA 1082 || | ||| |||||| |||||||||||||||||||||||||| ||||| ||| |||| | Sbjct 1222 CTGCTTTC-TGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAGCTACATATGATATAGA 1280 Query 1083 CACCATTC-TTGAAGGGAT-AAAAAGTCTTGAGATCACACCAGAAATGATTAGGCAGTTT 1140 ||| | || |||| ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1281 CACTA-TCAATGAATCGATCGGAAA-TCTTGAGATCACACCAGAAATGATTAGGCAGTTT 1338 Query 1141 CTTCCGAAAGTTAATTGGGA-TCAATTGGATATCAAGAACCGTTCTGCTGCAGAATGTGA 1199 ||||||||| |||| ||||| || |||||||||||| |||||||||||||||||||||| Sbjct 1339 CTTCCGAAAATTAACTGGGATTC-GTTGGATATCAAGGACCGTTCTGCTGCAGAATGTGA 1397 Query 1200 AGCCCGGTGGATGAGCTCGGATGATCCATTGATTAACAACGGTCCATGGACTGTAGCAGA 1259 ||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||| |||||| Sbjct 1398 AGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGTGGACTGCAGCAGA 1457 Query 1260 AGACAATTACATACGCTTATTTA-CCAA-AAACAAGGGTTTTACAGACTGGCTTGACATT 1317 ||||| || ||| | | || | || |||| | || ||||||||||| |||| || Sbjct 1458 GGACAAAAACCTACTCCGAACTATCGAACAAAC--GAGTCTTACAGACTGGGTTGATATC 1515 Query 1318 GCGGTATCACTGGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGATATCAGAGAAGC 1377 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516 GCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGATATCAGAGAAGC 1575 Query 1378 TTGAATCCA-GATATATTGAGAAAAGAATGGACTGCAGAGGAAGATGACCAACTCCGTGC 1436 ||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 1576 TTGAATCCAAGC-ATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACCAACTTCGTAC 1634 Query 1437 CGCAGTAGACTTGTTTGGCGAGTCAGACTGGCAATCTGTTGCAAATGTATTACAAGGAAG 1496 |||||||| || ||||| ||| |||||||||||||||||||||||||||| ||||||| Sbjct 1635 TGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTATTAAAAGGAAG 1694 Query 1497 AACTGGACCTCAGTGCTCTAATAGATGGAAAAAGTCGCTTCACCCTAGCAGAACAAGGAA 1556 ||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| |||| | Sbjct 1695 AACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCAGAA-AAGGGA 1753 Query 1557 ACGAAACTGGAGCTCAGAGGAAGACAAACGAT-TGAAAG-TAGCTGTAACACTGTTTGGA 1614 | | ||||||| ||||||||||||||| | | |||| ||||||| ||||| |||||| Sbjct 1754 -C-A---TGGAGCTTAGAGGAAGACAAACG-TGT-AAAGGTAGCTGTGACACTCTTTGGA 1806 Query 1615 ACTAAAAACTGGCGTAAAATTGGTCAGTTTGTTCCTGGACGGACGG-GTACTCAGTGTCT 1673 || ||||||||| ||||||| ||||||||||||||||||||| | |||||||||| Sbjct 1807 TCTCAAAACTGGCATAAAATTTCTCAGTTTGTTCCTGGACGGACTCAG-ACTCAGTGTCG 1865 Query 1674 AGAGAGATGGGGAAATTCTTTAGATCCCAAACTTAAATT-TGGGAAGTGGACCAAGGAAG 1732 ||||||||| ||||| ||||||||||||| | |||| |||||||||||| |||||| Sbjct 1866 GGAGAGATGGTTAAATTGTTTAGATCCCAAAGT-AAATCGTGGGAAGTGGACTGAGGAAG 1924 Query 1733 AGGATGCAAAA-TTGAGAGAAGCAAT-GAAAGAACATGGACATTGTTGGTCTAAAGTTGC 1790 |||||| |||| |||||||||||||| | | || |||||| || | |||||||| || || Sbjct 1925 AGGATG-AAAAGTTGAGAGAAGCAATTGCA-GAGCATGGATATAGCTGGTCTAAGGTGGC 1982 Query 1791 TTCATA-TATGTCTTGTCGCACTGACAGTCAGTGCGCGAGGAGATGGAAGAGCTTATATC 1849 | | || | |||| ||||| ||||||| ||||||| ||||||||||||||| ||||||| Sbjct 1983 TAC-TAATCTGTCATGTCGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGATTATATC 2041 Query 1850 CTCACCTAGCG-CATCTTAGACAAGAAGCTAGAAGGTTACAAAAAGAAGCTACTATAGGT 1908 |||| | || | | |||| |||||||||||||||||||||||||||||||| | ||||| Sbjct 2042 CTCATCAAGTGGC-TCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGTGTAGGT 2100 Query 1909 AATTTTGTTGACCGCGAATCAGAGCGTCCAGATCTTGTCGTAGGCGATTTTTTGGCACTA 1968 ||||||||||| || |||||||||||||| | ||||||| | || | ||||||||||| Sbjct 2101 AATTTTGTTGATCGGGAATCAGAGCGTCCTGCTCTTGTCACAAGCCCTATTTTGGCACTA 2160 Query 1969 GCTGAGATATCTCTTGAGCCAGAA---GA-ACCTGT--CC-TGACGAAGAAACGAAAA-C 2020 | || |||||||| ||||||||| || | ||| || ||| ||||||||| ||| | Sbjct 2161 CCGGATATATCTCTAGAGCCAGAACCCGATAG-TGTAGCCCTGAAGAAGAAACGCAAAGC 2219 Query 2021 CAAGACATACGAAGAAGGCAGATACAGA 2048 |||| || ||||||| ||||| |||| Sbjct 2220 CAAG-CA---GAAGAAGTCAGATGCAGA 2243 Score = 272 bits (147), Expect = 1e-71 Identities = 208/236 (88%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 295 GACGAAGATGAAGATGGTGCATTTGAAACCCTTCGCGCTATTCGTAGACGATTCTTTGCT 354 ||||| || ||||||| ||| |||||||| ||||| ||||||||||| ||||||| |||| Sbjct 505 GACGATGAAGAAGATGATGCCTTTGAAACACTTCGTGCTATTCGTAGGCGATTCTCTGCT 564 Query 355 TATGAA-AATTTCGATGT-GGAAGGAAATTTCATGAATGATTCTTCACCCGGGAAGAAGA 412 ||| || ||||||||| | ||||||||| |||||||||||||| ||| | || ||||| Sbjct 565 TAT-AAGAATTTCGAT-TCGGAAGGAAAATTCATGAATGATTC-TCA--C-GG--GAAGA 616 Query 413 AAAAGCAGGTACATGCCTCGGATAATGAACCTTCAACCGAAATATTGAGTAGATCTAATA 472 |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 617 AAAAGCAGGTACATAACTCGGACAATGAACCTTCAAGCGAAATATTGAGTAGATCTAATA 676 Query 473 CTTGTGAAAGCTTTCCAGATCACGGGAAATCAGCTGTTACAGAGCCAGATTCAGAG 528 ||||||||||||||||||||||||||||||||| ||| || | |||||| |||||| Sbjct 677 CTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACTGTGCCAGACTCAGAG 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115862857860 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5