BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354793
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30600.1 | Symbols: | Subtilase family protein | chr1:10841... 584 3e-166
> AT1G30600.1 | Symbols: | Subtilase family protein | chr1:10841142-10845050
REVERSE LENGTH=2842
Length=2842
Score = 584 bits (316), Expect = 3e-166
Identities = 361/383 (94%), Gaps = 2/383 (1%)
Strand=Plus/Plus
Query 226 TTCCTACAATTCACTCCTGCAGCCATTGCATCCGCACTTTCAACAACAGCTTCTCTATCA 285
|||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2020 TTCCCACATTTCACTCCTGCAGCCATTGCATCCGCACTTTCAACAACGGCTTCTCTATCA 2079
Query 286 GACAGAAAGGGTGAGCATATAATGGCACAACGCACTGTCTTAAACCCCGACATTAGTCAG 345
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2080 GACAGAAAGGGTGAGCATATAATGGCGCAACGCACTGTCTTAAACCCCGACATTAGTCAG 2139
Query 346 TCCCCTGCAACTCC-TTTCGATATGGGTAGCGGATTCGTCAATGCAACTGCAGCTCTTGA 404
||||||||||| || ||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 2140 TCCCCTGCAACACCGTTT-GATATGGGTAGCGGATTTGTTAATGCAACTGCAGCTCTTGA 2198
Query 405 CCCTGGTTTGATTTTCGACATAGGTTACAATGAATACATGAAGTTTCTCTGTAGCATCAA 464
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2199 CCCTGGTTTGATTTTTGACATAGGTTACAATGAATACATGAAGTTTCTCTGTGGTATCAA 2258
Query 465 CGGATCATCTCCAGTTGTTCTCAACTTCACCGGTGAAAGCTGCTCGGCGTACAACTCCTC 524
||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||| ||
Sbjct 2259 CGGATCATCTCCAGTCGTTCTCAACTACACCGGTGAAAGCTGCTCGTCATACAACTCTTC 2318
Query 525 CCTTGCAGCCTCTGACTTGAACCTACCCTCAGTCACAATAGCTAAACTAGTTGGTACTCG 584
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2319 CCTTGCAGCCTCTGACTTGAACCTACCCTCAGTCACAATAGCTAAACTCGTTGGGACTCG 2378
Query 585 AACTGTACTAAGATGGGTGACTA 607
| | || ||||||||||||||||
Sbjct 2379 AGCCGTCCTAAGATGGGTGACTA 2401
Score = 361 bits (195), Expect = 6e-99
Identities = 215/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCCTACCTATGGCATTACTGCTCCCAAGGTCATGTATTTCTCTGCTAGAGGACCT 60
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1762 ATGAGGCCTACCTATGGCATTACAGCTCCCAAGGTCATGTATTTCTCTGCTAGGGGACCT 1821
Query 61 GACCCAGAAGATGATTCTTTCGTTAATGCTGATATAATGAAACCCAACTTAGTAGCTCCC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1822 GACCCAGAAGATGATTCTTTCGTTGATGCTGATATAATGAAACCCAACTTAGTAGCTCCC 1881
Query 121 GGAAATGCGATATGGGGCGCTTGGAGTCCTCTTGGCATTGGTACAACCGATTTTCAAGGT 180
||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1882 GGAAACGCGATATGGGGAGCTTGGAGTCCTCTTGGCATTGGTACAAATGATTTTCAAGGT 1941
Query 181 GAACGATTTGCAATGGAATCGGGGACAAGCATGTCTGCTCCACAT 225
||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1942 GAACGTTTTGCGATGGAATCGGGGACAAGCATGTCTGCTCCACAT 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5