BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354800
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19550.2 | Symbols: | zinc ion binding;transcription regula... 741 0.0
> AT4G19550.2 | Symbols: | zinc ion binding;transcription regulators
| chr4:10659253-10661311 REVERSE LENGTH=1020
Length=1020
Score = 741 bits (401), Expect = 0.0
Identities = 478/514 (93%), Gaps = 9/514 (2%)
Strand=Plus/Plus
Query 189 GGTTGCTGATAATCTAACTAATAAAAAGGAATTCATTCTGAAGAAGAGAGCATGGGAATT 248
||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 346 GGTTGCTGAGAATCTAAGTAATAATAAGGAATTCATTCTGAAGAAGAGAGCATGGGAATT 405
Query 249 GATGAACCCTGAATACCAAAAGGGAAATTATAGGAAAGTCACCACTGGGAAAAAGAAGGA 308
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 406 GATGAACCCTGAATACCAGAAGGGAAAATATAGGAAAGTCACCACTAGGAAAAAGAAGGA 465
Query 309 TCCTGCTAATAAGACTGCTCCTGGTAAGAAAACTTCTGCAACCAGAACTGAAAGCAATGC 368
|||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 466 TCCTGCTAATAAGATTGCTCCTAGTAAGAAAACTTCTGCAACCAAAACCGAAAGCAATGC 525
Query 369 AGGGAGTGAAAATAAAAAGAGACCGAGTTTGGAAATCAATTACGATGTCTTGGATAAGCT 428
|| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 526 AGAAACTGAAAATAAAAAGAGACCGAGTTTGGAAATCAATTACAATGTCTTGGATAAGCT 585
Query 429 ATTTGATCCTGAGAACTCTCCGAAGAGGGCGAAGCTAGATAAACCA---GTTGTTGGTGA 485
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 586 ATTTGATCCTGAGAACTCTCCCAAGAGGGCAAAGCTAGATAAACCAGTTGTTGTTGGTGA 645
Query 486 CCAAACGGAATATTCAAAGCAAAGCAGTGAAGAAAGCCTTTTGAAACCACAGTATTCT-- 543
||||| |||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 646 CCAAATAGAATATTCAAAGCAAAACAGTGAAGAAAGCCTTTTGAAATCTCAGTATTCTGA 705
Query 544 ---A-ACGAAGAAGAAGCAGAAGAACCAGACTGGAATGAGGATTACAGTAATGAAGATGC 599
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGAAGAAGAAGAAGAAGCAGAAGAACCAGACTGGAATGAGGATTACAGTAATGAAGATGC 765
Query 600 GTATAGAGGAAACGAAGAATGCTACGGCGATGAGAATCTTGAATTTGAAGATCAAGATGA 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 766 GTATAGAGGAAACGAAGAATGCTACGGCAATGAGAATCTTGAATTTGAAGATCTAGATGA 825
Query 660 AGAAGAAGAAGATAATGAAGGGGTAATTTGGTGA 693
|| ||||||||| ||||||||||||||||||||
Sbjct 826 CGATGAAGAAGATGATGAAGGGGTAATTTGGTGA 859
Score = 161 bits (87), Expect = 7e-39
Identities = 101/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 82 AAGTCATTGGCTAGAAATCGAAAAGTCTGTGGCAACAAAGGAGTTTTTCCTTGTAGACAG 141
|||| |||||||||||| | |||||| | ||||||||||||||||||||||| | |||||
Sbjct 160 AAGTTATTGGCTAGAAACCTAAAAGTATATGGCAACAAAGGAGTTTTTCCTTCTCGACAG 219
Query 142 TCTAAAGGTGATCTTGCAGAGGACTTATCTGATATCAGTGATGCTGAG 189
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TCTAAAGGTGATCTTGCAGAGGACTTATCTGATATCAGTGATGCTGAG 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5