BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354804
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19470.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1037 0.0
> AT4G19470.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:10612993-10614339 REVERSE LENGTH=1254
Length=1254
Score = 1037 bits (561), Expect = 0.0
Identities = 826/951 (87%), Gaps = 30/951 (3%)
Strand=Plus/Plus
Query 1108 CAGTACTTGGACGCTCATGGCTGTATCTCACTCGAAACAGTAGCAACACCCATGACGCTT 1167
||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 292 CAGTACTTGGATGTTCATGGCTGTATCTCACTCGAAACAGTTTCAAAACCCATGACGCTT 351
Query 1168 CTTGTGATAGCTGAAAAGACACATTCTACTTTCGTATTCACGGATTGCTTCAAGCTAAAC 1227
|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 352 CTAGTGATAGCTGAAAAGACCCATTCTACTTTCGTATTCACGGATTGCTACAAGCTAAAC 411
Query 1228 CGAGATGCACAAGAAAATATTGTGGCTCATACTCAACTCAAGAGTCAAATACTGGCGAAT 1287
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 412 CGAGATGCACAAGAAAAAATTGTGGCTCATACTCAGCTCAAGAGTCAAATACTGGCGAAT 471
Query 1288 GGATCTCTTCAACGTAATCATAAGGTCCAATATCTTCGGTTTTATCATTTTCAGGAACTA 1347
||||| |||||| |||||||||||||| | | || || | |||||||
Sbjct 472 AGATCTTTTCAACTTAATCATAAGGTCC-A-A---TC-------TC----T--GGAACTA 513
Query 1348 GTTTTGGAACCTTTAGCTGCTGTAAGTTTTCCAGGAAACGATTTGCCATTATGGTTCTGC 1407
||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||| ||
Sbjct 514 GTTTTGGAACCTTTATCTGCTGTAAGTTTTCCAGGGAATGATTTGCCACTATGGTTCCGC 573
Query 1408 CATCAGAGAATGGGATCTTCAATGGAAACCCACCTACCTCCACACTGGTGTGACGATAAA 1467
||||||||||| |||||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct 574 CATCAGAGAATTGGATCTTCAATGGAAACCAACCTGCCTTCACACTGGTGCGACGATAAA 633
Query 1468 TTCATTGGCCTTTCTCTCTGCATTGTTGTCTCTTTCAAGGACTATGAAGATAGAACCAGC 1527
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 634 TTCATTGGTCTTTCTCTCTGCACGGTTGTCTCTTTCAAGGACTATGAAGATAGAACCAGC 693
Query 1528 CGTTTCTCGGTAATATGCAAGTGCAAGTTTAGAAACGAAGACGGTAATTCCATCAGCTTT 1587
|| ||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 694 CGGTTCTCCGTGATATGCAAGTGCAAGTTCAGAAACGAAGACGGTGATTACATCAGCTTT 753
Query 1588 ACTTGCAATCTTGGAGGATGGACCGAGTCA-TCTGCATCATCAAGCC-TCGAAGAACCAA 1645
|| || |||||||| ||||||| ||| || | || ||| || |||| | |||||| |||
Sbjct 754 ACATGTAATCTTGGGGGATGGAAAGAG-CAGTGTGGATCGTCTAGCCAT-GAAGAATCAA 811
Query 1646 GACGACTTACCTCTGATCATGTGTTCATCAGTTACAACAACTGTTTCTATGCCAAGAAAA 1705
|| |||||| |||||||||||||||||||||||| | |||||||| | ||||||||||||
Sbjct 812 GAAGACTTAGCTCTGATCATGTGTTCATCAGTTATAGCAACTGTTACCATGCCAAGAAAA 871
Query 1706 GCCATGATCTCAATAGGTGTTGCAACACCACCGCCTCATTCAAATTCTTTAATACTGATG 1765
| ||||||||||||| |||||||||||||| ||||| |||||||| ||| ||||||||
Sbjct 872 ACGATGATCTCAATAGATGTTGCAACACCACAGCCTCGTTCAAATTTTTTGTTACTGATG 931
Query 1766 GACA-AGCCAAAAGAAAGCCAGATTTCTGTGAGGTAGTGAAATGTGGGATGAGCTAT-TT 1823
| || |||||||||||| | ||||| ||||||||| |||||||| |||||||||| | ||
Sbjct 932 G-CAGAGCCAAAAGAAAACTAGATTGCTGTGAGGTGGTGAAATGCGGGATGAGCT-TGTT 989
Query 1824 ATATGCACCGGATGAGAATGATTATAGATTGCA-GGGATTACAGGAGAATAGCCTCGAGA 1882
||||||||| ||||||||||||| ||| ||||| ||| ||||| ||||||| || ||||
Sbjct 990 ATATGCACCAGATGAGAATGATTGTAGGTTGCATGGG-TTACACGAGAATAATCTTGAGA 1048
Query 1883 AAGCGGTATCTAGAAAAGAAACAGAACTAATTGAAACCGCATTGGATGAAGCTGCTATGT 1942
||| | ||||| ||||||| |||||||||| |||||||| |||||| ||| || | |||
Sbjct 1049 AAGAGATATCTGGAAAAGATACAGAACTAAACGAAACCGCCTTGGATAAAGTTGTTGTGT 1108
Query 1943 CCAAGAAAGCCCGTTTATGTTTACAAGAGGAAGAGCTACTGAACAGGAAAAGAA-AGAAG 2001
|||||| || |||||||||| ||||||| ||||||||||||||||||||||||| | |||
Sbjct 1109 CCAAGAGAGGCCGTTTATGTGTACAAGAAGAAGAGCTACTGAACAGGAAAAGAATA-AAG 1167
Query 2002 GATGATATCTCTTTTTCTGGTCATGAGTGTTCTGTAACTTCTGTTTTTAGT 2052
|| || |||||||| | | | || ||||||||||||||| || |||||
Sbjct 1168 GAAGACGTCTCTTTTGGTAATTACGATTGTTCTGTAACTTCTATTCTTAGT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158109075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5