BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354881
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18650.1 | Symbols: | transcription factor-related | chr4:1... 1011 0.0
> AT4G18650.1 | Symbols: | transcription factor-related | chr4:10263969-10265439
REVERSE LENGTH=790
Length=790
Score = 1011 bits (547), Expect = 0.0
Identities = 649/696 (93%), Gaps = 15/696 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAACCTAGTAGAAGAAAAGTTCCTAGAGTTCTATGAGAGTTGGGTTATACAACTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 27 ATGAGAAACCTAGTAGAAGAAAAGTTCCTAGAGTTCTATGAGAGTTGGGTTATTCAACTT 86
Query 61 GAGCTATATCTTCATCAACTTTTAATTG--C-T--C-ATAACACTATGAGTGAGACCGAG 114
|||||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 87 GAGCTATATCTTCATCAACTTTTAATTGCTCATAACAATAACACTATGAGTGAGACCGAG 146
Query 115 CTTCGAGC-TTTGATCTCGAAGCTAACTACACATCACAAAGCTTATTACACAGCCAAATG 173
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 147 CTTCGA-CATTTGATCTCGAAGCTAACTACACATCACAAAGCTTATTATACAGCCAAATG 205
Query 174 GGCAGCCATAGGAGAAGATGTTTTAGCTTTCTTT-GGA-CCGATTTGGCTAAACCCGTTA 231
|||||||||| |||||||||| |||||||| ||| ||| | | ||||| |||||||||||
Sbjct 206 GGCAGCCATAAGAGAAGATGTCTTAGCTTT-TTTCGGATCAG-TTTGGTTAAACCCGTTA 263
Query 232 GAGAAAGCTTGCTTTTGGTTAACCGGATGGAAACCGTCTACGGTATTTCGGATGGTTGAT 291
||||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 264 GAGAATGCTTGCTCTTGGTTAACCGGATGGAAACCGTCGATGGTGTTTCGGATGGTTGAT 323
Query 292 AGGCTGAGGAAGTACTCGAGGGTGGTGCTTGTGGAGGCTCAGGTGAGGAAATTGGAGGAG 351
|||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 324 AGGCTGAGGAAG---TCGAGAGTGGTGCTTGTGGAGGCTCAGGTGAAGAAATTGGAGGAG 380
Query 352 TTGAGAGTTAAGACCAAGTTCGATGAGCAAAAAATTGAGAGGGAGATGGAGCGGTATCAG 411
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 381 CTGAGAGTTAAGACCAAGTTCGATGAGCAAAAAATTGAGAGAGAGATGGAGCGGTATCAG 440
Query 412 GTGGCTATGGCTGATCGGAAGATGGTGGAACTGGCGAGGCTTGGATGTCACGTCGGAGGA 471
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 441 GTGGCTATGGCTGATCGGAAAATGGTAGAGCTGGCGAGGCTTGGATGTCACGTCGGAGGA 500
Query 472 GAATCGGTGGTGGTGGTGGAGGCAGCGGTGAGGGGATTAGCGACGGGTCTTGAGAAGATG 531
||||||||| |||||||||||||||||||||| |||||| ||| |||||||||||| |||
Sbjct 501 GAATCGGTGATGGTGGTGGAGGCAGCGGTGAGAGGATTATCGATGGGTCTTGAGAAAATG 560
Query 532 GTGAAAGCGGCGGATTGTGTGCGGCTGAAAACGCTTAAAGGTATTTTAGACATTTTAGCA 591
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 561 GTGAAGGCTGCGGATTGTGTGCGGCTGAAAACGCTTAAAGGTATATTAGACATTTTAACT 620
Query 592 CCACCACAGTGCGTTGAGTTTTTGGCAGCGGCGGCTACGTTTCAGGTTCAGTTACGTCGG 651
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CCACCGCAATGCGTTGAGTTTTTGGCAGCGGCGGCTACGTTTCAGGTTCAGTTACGTCGG 680
Query 652 TGGGGGAACCGAAGACATAATGTCACTCACTCCTGA 687
||||| |||||||||||| |||||||||||||||||
Sbjct 681 TGGGGAAACCGAAGACATTATGTCACTCACTCCTGA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5