BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354904

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23201.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...  89.8    2e-17


> AT1G23201.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK 
(InterPro:IPR012891); BEST Arabidopsis thaliana protein match 
is: GCK domain-containing protein (TAIR:AT5G02210.1); Has 
106 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8230209-8230775 
FORWARD LENGTH=567
Length=567

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 56/60 (93%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  1   ATGTCATCCACGGATCTGAAACCGGAATCCAAATCTGAAAGTAACCAAGTCCCGTCCAAG  60
           ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |||
Sbjct  1   ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG  60



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5