BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354918
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18320.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1042 0.0
AT4G18310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 645 0.0
> AT4G18320.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G18310.1); Has 37 Blast
hits to 37 proteins in 9 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:10124521-10125978
FORWARD LENGTH=1458
Length=1458
Score = 1042 bits (564), Expect = 0.0
Identities = 840/965 (87%), Gaps = 52/965 (5%)
Strand=Plus/Plus
Query 70 AGGGATTCATGGGGAAGTTTGCCTCAAGAGCTCCTCAGAACATCTACAAATTTGCTTAAC 129
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 535 AGGGATTCATGGGGAAGTTTGCCTCAAGATCTCCTCAGAAGTTCTACAAATTTGCTTAAC 594
Query 130 CCTAACTTTGCCGAATATGAGGCACTAAG-GCGCGTCAACAGTCATTGGAGGAAAACGTT 188
||||||||| ||||| || ||||||||| | | ||||||| |||||||||||| || ||
Sbjct 595 CCTAACTTTACCGAAGGTGGGGCACTAAGAG-GTGTCAACACTCATTGGAGGAACACATT 653
Query 189 TCCTTCTTTCCGTGATGGAAGTTTCAG-AGAGGAAAGGCCTTGGTTGTTGTACCGTGAAA 247
|| |||||||||||| ||| ||||| | |||||||||||| |||||||||||||||||||
Sbjct 654 TCTTTCTTTCCGTGAAGGAGGTTTC-GTAGAGGAAAGGCCGTGGTTGTTGTACCGTGAAA 712
Query 248 TGGGATCCCGACATGCCCATTTCTATGACCCTGTGAGAGA-GAGTCTACACT-ATAGGAA 305
|||||||||| ||||||||||||||||||||||||||| ||| ||||| | || ||||
Sbjct 713 GGGGATCCCGAGTTGCCCATTTCTATGACCCTGTGAGAGAGGAG-CTACA-TCATGGGAA 770
Query 306 AGACCCAAATCTTGAAGGGGCCAAATTCTTAGGATCAACATTGGGTTGGGTTGTTATGTC 365
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGACCCATATCTTGAAGGGGCCAAATTCTTAGGATCAACATTGGGTTGGGTTGTTATGTC 830
Query 366 CAACTCCATTGCCACACACCGACG-CGAACACCACCAAACTTTCTTATACAACCCATTCA 424
|||||||| ||||| ||||||||| | || |||||||| |||||||||||||||| ||||
Sbjct 831 CAACTCCAGTGCCATACACCGACGTC-AAGACCACCAAGCTTTCTTATACAACCCGTTCA 889
Query 425 CTTCACAACGGTACCAACTACCCGTTCTCACCGTACTACCCGTTCTCACCTTTGGA-AAC 483
||||||||||||| | | | | | ||| ||| |||||||| | || |||
Sbjct 890 CTTCACAACGGTA-C--C-A---------A-C-TAC--CCC-TTCTCACCACT-GATAAC 930
Query 484 CCACGTCGGGAGAGTGTGATCCGTTACGGTGTGCTCACGGGAGATCCACGTGAAGACAAT 543
||| | ||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 931 CCA--T-------GTGTGATCCGTTACGGTGTGCTCACCGGAGATCCCCGTCAAGACAAC 981
Query 544 ACTTATGCTTGTCTCCTAGGCGATAGCTTTCACGATAATAATCTTATGGAT-ATACCGTA 602
||||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||| || |
Sbjct 982 ACTTATGCTTGTCTCCTAGCCGATAGCTTTCACGAAAATAATCATATGG-TGATAGCGCA 1040
Query 603 TGTGCATGTTCCTAATCTACAAATATATTATGTAGCCAAGAGGAACGGAGAATGGGATCA 662
| |||||| ||||| || |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1041 TATGCATGCTCCTAGTCGACAAATATATTATGTAGCCAAGAGTAACGGAGACTGGGATCA 1100
Query 663 GGACTGGTCAGTGACTCATATCCCTACC-TCATACCATGAC-ATTTATAATTCGACTATA 720
| ||||||||||||||| |||||||||| ||| ||||| | |||| | ||||||||||
Sbjct 1101 GAACTGGTCAGTGACTCGTATCCCTACCTTCA-ACCAT-CCAATTTGTGGTTCGACTATA 1158
Query 721 CAGTCCATCTCCCCATCTGCGGACAAAATATCAATT-TTATTATCGGACCATAGTTTTGA 779
| ||| |||||||||||| |||||||||||||||| || |||| || ||||| | ||||
Sbjct 1159 GATTCCCTCTCCCCATCTGTGGACAAAATATCAATTATT-TTATGGGGCCATACTCTTGA 1217
Query 780 CTTCACCTTCCAAACCCAAGAA-TGGAATGTCTCAAAGACTCAAGAGAATGATCCCATCG 838
||||||||||| ||||||| || |||||||||||||| ||||||||||||||| ||||||
Sbjct 1218 CTTCACCTTCCGAACCCAA-AATTGGAATGTCTCAAATACTCAAGAGAATGATACCATCG 1276
Query 839 ATTGGAATCCTTTCCACGGCCAATCTTTTGATCAGATGAAAGATCGTCTTCAGATATCTC 898
| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||
Sbjct 1277 AATGGAATCCTTTCCACGGCCAATCTTTTGATCAGATCAAACATCGACTTCAGATATTTC 1336
Query 899 CACAAACTCTAGCCATTATAGGCACTAAAACTGATCGCGAGAGAGTGAGAAACAACACTT 958
|||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct 1337 CACAAACTCTAGACATTATCGGCACTAAAACTGATCGCGAGAGAGTGAAAAACCGCACTT 1396
Query 959 GGGGTGCTAATGACGGTCAAAGCGTTTCTTACATTGACGGAGTTTGGGTTGAGGTTCGCG 1018
|||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1397 GGGGTGCTAACAAC---CAAATCGTTTCTTACACTGACGGAGTTTGGGTTGAGGTTCGCG 1453
Query 1019 CTTAG 1023
|||||
Sbjct 1454 CTTAG 1458
> AT4G18310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G18320.2);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr4:10122075-10122990 FORWARD LENGTH=864
Length=864
Score = 645 bits (349), Expect = 0.0
Identities = 638/771 (83%), Gaps = 45/771 (6%)
Strand=Plus/Plus
Query 262 GCCCATTTCTATGACCCTGTGAGAGAGAGTCTACACTATAGGA---AAGACCCAAATCTT 318
|||| |||||| ||||||||||||||||| |||||| |||||| | |||| |||||||
Sbjct 130 GCCCGTTTCTACGACCCTGTGAGAGAGAGGCTACACAATAGGAGGTATGACCAAAATCTT 189
Query 319 GAAGGGGCCAA-ATTCTTAGGATCAACATTGGGTTGGGTTGTTATGTCCAACTCCATTGC 377
|||| || ||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 190 GAAGAGG-CAAGATTCTTGGGATCAACATTGGGTTGGGTTGTTATGTCCGACTCCATTGT 248
Query 378 CACACA-CCGACGCGAACACCACCAAACTTTCTTATACAACCCATTCACTTCACAACGGT 436
| | | || ||||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 249 CGGA-ATCCCACGCGAAGACCACCAAACTTTCCTATACAACCCTTTCACTTCACAACGGT 307
Query 437 ACCAACTACCCGTTCTCACCGTACTACCCGTTCTCACCTTTGGAA-ACCCACGTCGGGAG 495
|| ||||| | | | || | || | || | || ||| |||||| || ||
Sbjct 308 ACGAACTA--C---C-C-CC-T-CT---C--ACT-A---TT-GAAGACCCACATCTCAAG 348
Query 496 AGTGTGATCCGTTACGGTGTGCTCACGGGAGATCCACGTGAAGACAATACTTATGCTTGT 555
|||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 349 AGTGTGCTCCGTTACGGTGTTCTCACCGGAGATCCACGTGAAGACAACACTTATGCTTGT 408
Query 556 CTCCTAGGCGATAGCTTTCACGATAATAATCTTATGGATATACCGTATGTGCATGTTCCT 615
||| | | ||||||| |||||| ||||||||||| ||| | || |||| ||||
Sbjct 409 CTCGTCGCCGATAGCCTTCACG---CTAATCTTATGGCGATAGGGAATACGCATCCTCCT 465
Query 616 AATCTACAAATATATTATGTAGCCAAGAGGAACGGAGAATGGGATCAGGACTGGTCAGTG 675
| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 466 AGTCTACATTTATATTATGTAGCCAAGAGGAACGGAGAATGGGATCAGAACTGGTCAGTG 525
Query 676 ACTCATATCCCTACCTCATA-CCATGACATTTATAA-TTCGACTATACAGTCCATCTCCC 733
|||| |||||||||| |||| || | || || | |||||| ||| | ||||||||||
Sbjct 526 ACTCGTATCCCTACC-CATAACCTTC-CAGTTGTTGGTTCGACAATAGATTCCATCTCCC 583
Query 734 CATCTGCGGACAAAATATCAATTTTATTATCGGACCATAGTTTTGACTTCACCTTCCAAA 793
||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 584 CATCTGCGGACAAAATATCAATTATAGGATGGGGCCATAGTTTTGACTTCACCTTCCAAA 643
Query 794 CCCAAGAATGGAATGTCTCAAAGACTCAAGAGAATGATCCCATCGATTGGAATCCTTTCC 853
|||||| ||||||||| |||| | |||| | | | || || || |||||||||||||
Sbjct 644 GCCAAGATTGGAATGTCACAAATA-TCAATT-A-T-A-CC-ATGGAATGGAATCCTTTCC 697
Query 854 ACGGCCAATCTTTTGATCAGATGAAAGATCGTCTTCAGATATCTCCACAAACTCTAGCCA 913
|||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||| ||
Sbjct 698 ACGGCCAATCTTTTGATCAGATCAAACATCGACTTCAGATAGATCCACAAACTCTAGACA 757
Query 914 TTATAGGCACTAAAACTGATCGCGAGAGAGTGAGAAACAACACTTGGGGTGCTAATGA-C 972
| || |||||||||||||||||||| ||||||| |||| || |||| || || | | |
Sbjct 758 TCATCGGCACTAAAACTGATCGCGAAAGAGTGAAAAACCGCATTTGGTTTGTTA-TAAAC 816
Query 973 GGTCAAAGCGTTTCTTACATTGACGGAGTTTGGGTTGAGGTTCGCGCTTAG 1023
|||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 817 ---CAAATCATTTCCCACATTGACGGAGTTTGGGTTGAGGTTCGCGCTTAG 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5