BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354934

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17590.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Bacterial...   128    5e-29


> AT4G17590.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Bacterial 
Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); 
BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent 
methyltransferases superfamily protein 
(TAIR:AT4G26600.1); Has 459 Blast hits to 368 proteins in 
186 species: Archae - 2; Bacteria - 0; Metazoa - 137; Fungi 
- 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source: 
NCBI BLink). | chr4:9800843-9802591 REVERSE LENGTH=606
Length=606

 Score =  128 bits (69),  Expect = 5e-29
 Identities = 84/91 (92%), Gaps = 2/91 (2%)
 Strand=Plus/Plus

Query  338  AAGGC-TTCACAAGGTCTGATTATGTTGACCAGCTTAAAGATGATCTTGCTTCTCTTTAC  396
            ||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  431  AAGGCGTTCAC-ATGTCTGATTATGTTGACCAGCTTAAAGATGATATTGCTTCTCTTTAT  489

Query  397  GTGTACAATAGGTTTCTTATTACAACTTTGG  427
            | |||||||||||||||||||| ||||||||
Sbjct  490  GGGTACAATAGGTTTCTTATTAGAACTTTGG  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5