BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354934 Length=555 Score E Sequences producing significant alignments: (Bits) Value AT4G17590.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Bacterial... 128 5e-29 > AT4G17590.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 459 Blast hits to 368 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | chr4:9800843-9802591 REVERSE LENGTH=606 Length=606 Score = 128 bits (69), Expect = 5e-29 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 338 AAGGC-TTCACAAGGTCTGATTATGTTGACCAGCTTAAAGATGATCTTGCTTCTCTTTAC 396 ||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 431 AAGGCGTTCAC-ATGTCTGATTATGTTGACCAGCTTAAAGATGATATTGCTTCTCTTTAT 489 Query 397 GTGTACAATAGGTTTCTTATTACAACTTTGG 427 | |||||||||||||||||||| |||||||| Sbjct 490 GGGTACAATAGGTTTCTTATTAGAACTTTGG 520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26624097910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5