BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354950
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 523 9e-148
> AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17700.1);
Has 134 Blast hits to 131 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9984386-9985805
REVERSE LENGTH=938
Length=938
Score = 523 bits (283), Expect = 9e-148
Identities = 355/390 (91%), Gaps = 4/390 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGACGATGAGAAGTGCAGAAAGTTTTGGGATCGAGTGGGGGAATC-CGAGGGGTT 59
|||| ||||||||||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct 77 ATGGAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAGTGGCGGAATCTC-AGGGGTT 135
Query 60 CGATGTTGAGCATCTGATGGATAATAAACCAAAATCGTGTTTGCTCTACTATGAAAATTC 119
||||||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||||
Sbjct 136 CGATGTTGAGCATTTGATGGATGACAAACCAAAATCGTGTTTGCTCGACTATCAAAATTC 195
Query 120 TGATTTTGACAGTGAAGTCTTCCTTTATGCAAAGTTGGGGATCCATAAATACAATATGTT 179
|||||| |||| ||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 196 TGATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGGATCCATAAATACAATATGTT 255
Query 180 ACAGGGGACGAATTTGCAGCTCTGTTGCATAGAGAAATGCAATACACGAAGTAGCACAGT 239
|||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||
Sbjct 256 ACAGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGCAATTCACGAATTACCACAGT 315
Query 240 ATATACCGGTTACTCTATAACTTTGGTTGCTAAGGACCCATCTGCTGGCGGTTCCCTTGT 299
|| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 316 ATGTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGT 375
Query 300 AACTTTTCAGACCAAGGTTGTTAATGAAGACAATTATAAAATCAATACCCTGACTGTCTC 359
|||||||||||||||||||||| | |||||| ||| ||||||||||||||| || ||||
Sbjct 376 AACTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAAATCAATACCCTCACGGTCTA 435
Query 360 TATTGCAAGACTTAAGTC-CGAACCACCAC 388
| |||||||||||||||| | |||||||||
Sbjct 436 TCTTGCAAGACTTAAGTCGC-AACCACCAC 464
Score = 468 bits (253), Expect = 4e-131
Identities = 323/355 (91%), Gaps = 12/355 (3%)
Strand=Plus/Plus
Query 495 GATGAAAAAATCGGAGCTGCGAAAACATAACTGGATCCGTCTATACATGGAACTTGCATT 554
|||||| ||||||||| |||||||||| ||||| | ||||||||| |||||||||||||
Sbjct 467 GATGAAGAAATCGGAGGTGCGAAAACAGGACTGGGTTCGTCTATACTTGGAACTTGCATT 526
Query 555 CATCCATGCAAATGAG-GATCTTCCAAATCCCAATCTATCAAATTTGGTTATTATGAAGG 613
||||||||||||| || | |||||||||||||||||||||||| ||||||||| ||||||
Sbjct 527 CATCCATGCAAATCAGTG-TCTTCCAAATCCCAATCTATCAAAATTGGTTATTTTGAAGG 585
Query 614 TAGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAATG 673
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 586 TAGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAATG 645
Query 674 CAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAATA 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT- 704
Query 734 ATGGTCACAAGCCACCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAAC 792
||||||||||| |||||||||||| | ||||| | ||||||||||||||||||| |
Sbjct 705 --GGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--C 759
Query 793 AAGGGGCTCCTTAAACTC-ATGTTCGATAATCGGTATGCAAAAACTCTTCTGTAA 846
| |||||| || | |||| | |||||||| |||||||||||||||||||||||||
Sbjct 760 A-GGGGCTTCTCACACTCGA-GTTCGATACTCGGTATGCAAAAACTCTTCTGTAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5