BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354950 Length=846 Score E Sequences producing significant alignments: (Bits) Value AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 523 9e-148 > AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 134 Blast hits to 131 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9984386-9985805 REVERSE LENGTH=938 Length=938 Score = 523 bits (283), Expect = 9e-148 Identities = 355/390 (91%), Gaps = 4/390 (1%) Strand=Plus/Plus Query 1 ATGGGAGACGATGAGAAGTGCAGAAAGTTTTGGGATCGAGTGGGGGAATC-CGAGGGGTT 59 |||| ||||||||||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct 77 ATGGAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAGTGGCGGAATCTC-AGGGGTT 135 Query 60 CGATGTTGAGCATCTGATGGATAATAAACCAAAATCGTGTTTGCTCTACTATGAAAATTC 119 ||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||||||| Sbjct 136 CGATGTTGAGCATTTGATGGATGACAAACCAAAATCGTGTTTGCTCGACTATCAAAATTC 195 Query 120 TGATTTTGACAGTGAAGTCTTCCTTTATGCAAAGTTGGGGATCCATAAATACAATATGTT 179 |||||| |||| ||||||||||||| | || ||||||||||||||||||||||||||||| Sbjct 196 TGATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGGATCCATAAATACAATATGTT 255 Query 180 ACAGGGGACGAATTTGCAGCTCTGTTGCATAGAGAAATGCAATACACGAAGTAGCACAGT 239 |||||||||||||||||||||| |||||||||||||||||||| |||||| || |||||| Sbjct 256 ACAGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGCAATTCACGAATTACCACAGT 315 Query 240 ATATACCGGTTACTCTATAACTTTGGTTGCTAAGGACCCATCTGCTGGCGGTTCCCTTGT 299 || || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 316 ATGTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGT 375 Query 300 AACTTTTCAGACCAAGGTTGTTAATGAAGACAATTATAAAATCAATACCCTGACTGTCTC 359 |||||||||||||||||||||| | |||||| ||| ||||||||||||||| || |||| Sbjct 376 AACTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAAATCAATACCCTCACGGTCTA 435 Query 360 TATTGCAAGACTTAAGTC-CGAACCACCAC 388 | |||||||||||||||| | ||||||||| Sbjct 436 TCTTGCAAGACTTAAGTCGC-AACCACCAC 464 Score = 468 bits (253), Expect = 4e-131 Identities = 323/355 (91%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 495 GATGAAAAAATCGGAGCTGCGAAAACATAACTGGATCCGTCTATACATGGAACTTGCATT 554 |||||| ||||||||| |||||||||| ||||| | ||||||||| ||||||||||||| Sbjct 467 GATGAAGAAATCGGAGGTGCGAAAACAGGACTGGGTTCGTCTATACTTGGAACTTGCATT 526 Query 555 CATCCATGCAAATGAG-GATCTTCCAAATCCCAATCTATCAAATTTGGTTATTATGAAGG 613 ||||||||||||| || | |||||||||||||||||||||||| ||||||||| |||||| Sbjct 527 CATCCATGCAAATCAGTG-TCTTCCAAATCCCAATCTATCAAAATTGGTTATTTTGAAGG 585 Query 614 TAGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAATG 673 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 586 TAGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAATG 645 Query 674 CAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAATA 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 CAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT- 704 Query 734 ATGGTCACAAGCCACCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAAC 792 ||||||||||| |||||||||||| | ||||| | ||||||||||||||||||| | Sbjct 705 --GGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--C 759 Query 793 AAGGGGCTCCTTAAACTC-ATGTTCGATAATCGGTATGCAAAAACTCTTCTGTAA 846 | |||||| || | |||| | |||||||| ||||||||||||||||||||||||| Sbjct 760 A-GGGGCTTCTCACACTCGA-GTTCGATACTCGGTATGCAAAAACTCTTCTGTAA 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41242234687 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5